Hg_chrom4_TN10mRNA_7705
Organism: Heterodera glycines Gene Locus: chr4:4929287-4932216 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.23 | 1.283 | 0.543 | 0.713 | 1.264 | 1.061 | 0.575 | 1.149 | 0.92 | 1.864 | 1.01 | 1.352 | 1.341 | 0.707 | 1.22 | 0.887 | 0.452 | 0.697 | 1.415 | 0.947 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7270
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKHFEKLEKQKEKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.600
|
0.239
|
0.006
|
0.452
|
0.158
|
0.169
|
0.195
|
0.026
|
0.075
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002070
|
3.000
|
1.000
|
Hsc_gene_10114.t1
|
Hsc_gene_10114.t1
|
— |
Q96RK4.2 Bardet-Biedl syndrome 4 protein [Homo sapiens]
|
KAI3418848.1 Bardet-Biedl syndrome 4 protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.916|GO:0110165_0.907|GO:0016020_0.852|GO:0005622_0.839|GO:0043226_0.801|GO:0071944_0.767|GO:0005886_0.761|GO:0043227_0.754|GO:0008150_0.749|GO:0009987_0.707|GO:0043229_0.701|GO:0032991_0.621|GO:0098590_0.564|GO:0042995_0.557|GO:0051179_0.550|GO:0120025_0.550|GO:0005929_0.530|GO:0030990_0.530|GO:0065007_0.523|GO:0071840_0.521|GO:0016043_0.514|GO:0043228_0.502|GO:0043232_0.502
|
IPR011990+26-388_28-123_134-384+|IPR019734+54-87_92-125_168-201_257-290_291-324_325-358_328-354+
|
SM00028+54-87_92-125_168-201_257-290_291-324_325-358+
|
PF13181+168-201_328-354+Tetratricopeptide_repeat
|
— |
PTHR44186+19-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
421-435
|
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
49469.250
|
8.963
|
14.000
|
25.517
|
12.184
|
44.138
|
55.862
|
14.943
|
10.575
|
43.218
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
248.103
|
433.887
|
468.029
|
187.112
|
58.441
|
32.137
|
83.411
|
170.410
|
1.382
|
546.879
|
313.095
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.351
|
-1.213
|
-1.710
|
-0.848
|
1.387
|
2.307
|
-0.889
|
-7.877
|
7.414
|
— | — |
7.321
|
No JSON data available for plots.