Hg_chrom4_TN10mRNA_7706
Organism: Heterodera glycines Gene Locus: chr4:4929287-4932216 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.246 | 1.298 | 0.568 | 0.693 | 1.265 | 1.087 | 0.585 | 1.116 | 0.893 | 1.81 | 1.015 | 1.313 | 1.426 | 0.73 | 1.184 | 0.861 | 0.512 | 0.676 | 1.374 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7270
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKHFEKLEKQKEKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.586
|
0.178
|
0.008
|
0.486
|
0.110
|
0.205
|
0.171
|
0.007
|
0.085
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002070
|
3.000
|
1.000
|
Hsc_gene_10114.t1
|
Hsc_gene_10114.t1
|
— |
Q96RK4.2 Bardet-Biedl syndrome 4 protein [Homo sapiens]
|
KAI3418848.1 Bardet-Biedl syndrome 4 protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.918|GO:0110165_0.910|GO:0016020_0.853|GO:0005622_0.842|GO:0043226_0.805|GO:0043227_0.758|GO:0008150_0.757|GO:0071944_0.739|GO:0005886_0.734|GO:0009987_0.717|GO:0043229_0.706|GO:0032991_0.623|GO:0051179_0.560|GO:0098590_0.535|GO:0071840_0.529|GO:0042995_0.527|GO:0120025_0.521|GO:0016043_0.520
|
IPR011990+27-400_28-124_132-397+|IPR019734+54-87_92-125_168-201_202-235_203-234_270-303_304-337_338-371_341-367+
|
SM00028+54-87_92-125_168-201_202-235_270-303_304-337_338-371+
|
PF13181+168-201_203-234_341-367+Tetratricopeptide_repeat
|
— |
PTHR44186+19-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
434-448
|
1.000
|
1-433
|
8umr_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
50876.750
|
8.819
|
13.000
|
25.446
|
12.277
|
44.420
|
55.580
|
14.732
|
10.714
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
248.103
|
433.887
|
468.029
|
187.112
|
58.441
|
32.137
|
83.411
|
170.410
|
1.382
|
546.879
|
313.095
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.351
|
-1.213
|
-1.710
|
-0.848
|
1.387
|
2.307
|
-0.889
|
-7.877
|
7.414
|
— | — |
7.321
|
No JSON data available for plots.