SCN Proteipedia

Hg_chrom4_TN10mRNA_7707

Organism: Heterodera glycines Gene Locus: chr4:4929288-4932216 Feature type: polypeptide

Protein Sequence

Length: 444

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.257	1.309	0.573	0.699	1.276	1.097	0.59	1.126	0.901	1.826	1.024	1.325	1.439	0.736	1.103	0.837	0.517	0.648	1.386	0.927	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7270	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.955

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RKHFEKLEKQKEKKE	—	—	—	—	—	—	0.000	—	—	0.578	0.185	0.007	0.500	0.119	0.215	0.175	0.006	0.087	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002070	3.000	1.000	Hsc_gene_10114.t1	Hsc_gene_10114.t1	—	Q96RK4.2 Bardet-Biedl syndrome 4 protein [Homo sapiens]	KAI3418848.1 Bardet-Biedl syndrome 4 protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.919\|GO:0110165_0.913\|GO:0016020_0.853\|GO:0005622_0.842\|GO:0043226_0.802\|GO:0008150_0.762\|GO:0043227_0.755\|GO:0071944_0.722\|GO:0009987_0.721\|GO:0005886_0.716\|GO:0043229_0.704\|GO:0032991_0.626\|GO:0051179_0.542\|GO:0071840_0.539\|GO:0016043_0.531\|GO:0098590_0.517\|GO:0042995_0.508\|GO:0065007_0.506\|GO:0120025_0.502	IPR011990+27-396_28-120_128-393+\|IPR019734+54-87_88-121_164-197_198-231_266-299_300-333_334-367_337-363+	SM00028+54-87_88-121_164-197_198-231_266-299_300-333_334-367+	PF13181+337-363+Tetratricopeptide_repeat\|PF13431+186-214+Tetratricopeptide_repeat\|PF13432+60-117+Tetratricopeptide_repeat	—	PTHR44186+19-436+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	430-444	1.000	1-429	8umr_W	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.716	50378.170	8.529	11.000	25.225	12.387	44.144	55.856	14.414	10.811	43.694

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	248.103	433.887	468.029	187.112	58.441	32.137	83.411	170.410	1.382	546.879	313.095

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.351	-1.213	-1.710	-0.848	1.387	2.307	-0.889	-7.877	7.414	—	—	7.321

No JSON data available for plots.

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