Hg_chrom4_TN10mRNA_7710
Organism: Heterodera glycines Gene Locus: chr4:4935130-4937645 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.637 | 0.66 | 1.807 | 0.21 | 2.468 | 1.456 | 0.966 | 0.203 | 0.811 | 0.85 | 1.475 | 2.028 | 0.676 | 0.702 | 1.407 | 0.811 | 0.466 | 0.891 | 0.624 | 0.239 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7272
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KKKQERRRRRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.967
|
0.039
|
0.014
|
0.185
|
0.021
|
0.013
|
0.017
|
0.001
|
0.032
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003825
|
2.000
|
1.000
|
Hsc_gene_10112.t1
|
Hsc_gene_10105.t1
|
— |
Q61MR2.3 IWS1-like protein [Caenorhabditis briggsae]
|
KAI1723475.1 TFIIS helical bundle-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.931|GO:0110165_0.924|GO:0005622_0.898|GO:0043226_0.845|GO:0016020_0.831|GO:0043229_0.827|GO:0008150_0.803|GO:0043227_0.763|GO:0009987_0.748|GO:0043231_0.731|GO:0065007_0.695|GO:0005634_0.692|GO:0050789_0.671|GO:0050794_0.651|GO:0008152_0.643|GO:0044238_0.638|GO:0044237_0.635|GO:0043170_0.634|GO:0009058_0.626|GO:0009059_0.616|GO:0044249_0.616|GO:0006139_0.615|GO:0010467_0.611|GO:0019222_0.598|GO:0090304_0.598|GO:0034654_0.596|GO:0141187_0.591|GO:0060255_0.589|GO:0016070_0.588|GO:0080090_0.583|GO:0032774_0.582|GO:0019219_0.558|GO:0031974_0.557|GO:0043233_0.557|GO:0006351_0.554|GO:0051252_0.554|GO:0070013_0.551|GO:0031981_0.540|GO:0006354_0.535|GO:0071840_0.516
|
IPR017923+292-370_315-367+|IPR035441+231-373+|IPR051037+19-488+
|
— |
PF08711+315-367+TFIIS_helical_bundle-like_domain
|
G3DSA:1.20.930.10:FF:000001+231-372+IWS1,_SUPT6H_interacting_protein
|
PTHR46010+19-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-266;384-493
|
1.000
|
267-383
|
9rtt_a
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
55930.900
|
4.371
|
-39.000
|
41.785
|
4.462
|
58.824
|
41.176
|
17.039
|
24.746
|
45.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
2032.265
|
2791.822
|
2342.569
|
2275.494
|
2485.565
|
2312.052
|
2696.845
|
1923.543
|
2668.442
|
579.369
|
1474.686
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.482
|
-0.432
|
— |
0.096
|
— |
0.233
|
-0.370
|
0.630
|
2.088
|
— | — | — | — |
No JSON data available for plots.