Hg_chrom4_TN10mRNA_7711
Organism: Heterodera glycines Gene Locus: chr4:4938091-4941251 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.061 | 0.982 | 0.369 | 0.699 | 0.676 | 0.65 | 0.885 | 1.267 | 0.901 | 1.826 | 0.358 | 1.888 | 1.877 | 0.975 | 1.0 | 1.4 | 0.803 | 1.203 | 1.559 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7273
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.716
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
PKKGPAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.100
|
0.135
|
0.010
|
0.176
|
0.269
|
0.388
|
0.337
|
0.072
|
0.608
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003816
|
2.000
|
1.000
|
Hsc_gene_10111.t1
|
Hsc_gene_10111.t1
|
— |
O15245.2 Solute carrier family 22 member 1 [Homo sapiens]
|
KAH7729218.1 Protein K09E9.1 [Aphelenchus avenae]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.963|GO:0009987_0.924|GO:0005575_0.824|GO:0110165_0.824|GO:0003674_0.810|GO:0006810_0.806|GO:0051179_0.806|GO:0051234_0.806|GO:0016020_0.790|GO:0071944_0.761|GO:0055085_0.749|GO:0005886_0.746|GO:0005215_0.690|GO:0022857_0.690|GO:0071705_0.553
|
IPR005829+149-165+|IPR011701+133-509+|IPR020846+59-548+|IPR036259+54-555_131-554+
|
— |
PF07690+133-509+Major_Facilitator_Superfamily
|
— |
PTHR24064+52-554+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-36;557-592
|
1.000
|
37-556
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
64646.360
|
8.493
|
14.500
|
15.878
|
12.838
|
37.331
|
62.669
|
9.797
|
6.081
|
52.534
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
642.846
|
622.579
|
795.342
|
693.327
|
839.867
|
918.460
|
1716.379
|
463.157
|
529.127
|
147.192
|
310.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.245
|
— |
0.912
|
-1.094
|
2.032
|
— | — | — | — | — |
No JSON data available for plots.