Hg_chrom4_TN10mRNA_7717
Organism: Heterodera glycines Gene Locus: chr4:4951099-4956014 Feature type: polypeptideProtein Sequence
Length: 917
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.938 | 0.833 | 0.865 | 1.0 | 1.314 | 0.325 | 1.036 | 1.236 | 1.975 | 0.76 | 0.898 | 1.605 | 0.734 | 1.157 | 1.246 | 0.876 | 0.991 | 1.007 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7276
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.761
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.184
|
0.009
|
0.619
|
0.133
|
0.251
|
0.194
|
0.016
|
0.201
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001206
|
3.000
|
2.000
|
Hsc_gene_10109.t1;Hsc_gene_10109.t2
|
Hsc_gene_10109.t1;Hsc_gene_10109.t2
|
— |
Q9VT41.1 Integrator complex subunit 7 [Drosophila melanogaster]
|
KAI6218349.1 Integrator complex subunit 7 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016180|GO:0032039
|
GO:0008150_0.956|GO:0005575_0.737|GO:0110165_0.737|GO:0009987_0.673|GO:0016020_0.662|GO:0005622_0.651|GO:0005737_0.607|GO:0043226_0.595|GO:0043229_0.578|GO:0043227_0.558|GO:0043231_0.537|GO:0008152_0.534|GO:0044238_0.518|GO:0044237_0.508|GO:0009058_0.505|GO:0043170_0.502
|
IPR011989+95-293+|IPR016024+97-578+|IPR033060+763-873+
|
— |
PF22965+798-899+Integrator_complex_subunit_7,_C-terminal_domain
|
— |
PTHR13322+763-873+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
916-917
|
1.000
|
1-915
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
104157.740
|
7.512
|
10.500
|
23.337
|
11.014
|
46.565
|
53.435
|
12.759
|
10.578
|
45.474
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1156.831
|
2086.720
|
1067.479
|
1123.221
|
1204.727
|
879.872
|
1756.872
|
1002.399
|
588.163
|
1199.529
|
937.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.198
|
-1.031
|
0.183
|
— |
-0.439
|
1.008
|
— |
0.952
|
— | — | — | — | — |
No JSON data available for plots.