Hg_chrom4_TN10mRNA_7718
Organism: Heterodera glycines Gene Locus: chr4:4958175-4960545 Feature type: polypeptideProtein Sequence
Length: 497
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.076 | 0.695 | 0.624 | 1.241 | 1.393 | 0.862 | 0.704 | 0.581 | 1.088 | 0.732 | 1.184 | 1.565 | 1.586 | 1.355 | 1.868 | 0.693 | 0.396 | 1.238 | 0.296 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7277
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
FKRR,KRMKEDKEKEREKER,KKLTTVGTENANGKRMKE,RIRRSRPGSLKSGRSGRR
|
— | — |
34-61
|
0.989
|
— | — |
0.000
|
— | — |
0.854
|
0.153
|
0.021
|
0.388
|
0.046
|
0.039
|
0.083
|
0.020
|
0.051
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008517
|
1.000
|
1.000
|
Hsc_gene_10108.t1
|
Hsc_gene_10108.t1
|
— | — |
XP_024506908.1 HTH CenpB-type DNA-binding domain and Homeodomain-like and Brinker DNA-binding domain-containing protein [Strongyloides ratti];CEF67708.1 HTH CenpB-type DNA-binding domain and Homeodomain-like and Brinker DNA-binding domain-containing protein [Strongyloides ratti]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006600+299-399+|IPR051839+237-389+
|
SM00674+299-399+
|
— | — |
PTHR33215+237-389+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
326-497
|
1.000
|
1-325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
54729.060
|
7.583
|
4.500
|
24.145
|
9.658
|
51.509
|
48.491
|
12.877
|
11.268
|
53.320
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
719.730
|
658.645
|
156.256
|
1308.825
|
2027.651
|
715.856
|
75.634
|
245.276
|
288.845
|
986.630
|
687.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.305
|
0.854
|
3.175
|
0.599
|
-1.484
|
-3.234
|
-1.661
|
-1.551
|
— | — | — |
-8.123
|
— |
No JSON data available for plots.