Hg_chrom4_TN10mRNA_7721
Organism: Heterodera glycines Gene Locus: chr4:4965798-4966501 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 0.906 | 0.826 | 0.448 | 1.407 | 0.666 | 0.541 | 1.623 | 1.154 | 1.316 | 1.574 | 0.764 | 0.722 | 1.124 | 0.928 | 0.928 | 0.639 | 1.279 | 0.0 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7280
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
NRKLAKKVYKLVKKAAKEKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.615
|
0.328
|
0.055
|
0.502
|
0.126
|
0.058
|
0.084
|
0.001
|
0.059
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008520
|
1.000
|
1.000
|
Hsc_gene_10105.t1
|
Hsc_gene_10105.t1
|
— |
Q60YI3.1 Putative H/ACA ribonucleoprotein complex subunit 2-like protein [Caenorhabditis briggsae]
|
KAI1722535.1 ribosomal protein l7Ae/L30e/S12e/Gadd45 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0005730
|
GO:0005575_0.850|GO:0110165_0.808|GO:0008150_0.755|GO:0005622_0.747|GO:0009987_0.699|GO:0003674_0.677|GO:0043226_0.676|GO:0043229_0.659|GO:0016020_0.615|GO:0043227_0.575|GO:0043231_0.553|GO:0008152_0.521|GO:0044237_0.507|GO:0044238_0.504|GO:0005488_0.501
|
IPR002415+32-45_45-60_107-119+|IPR004038+44-138+|IPR018492+60-74_79-92_95-105_105-119+|IPR029064+26-151_29-143+
|
— |
PF01248+44-138+Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27
|
1.000
|
28-154
|
9qb3_i
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
17294.930
|
8.905
|
5.500
|
31.169
|
10.390
|
48.052
|
51.948
|
18.182
|
12.987
|
47.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2454.736
|
1491.816
|
1250.784
|
1715.719
|
1738.707
|
1361.522
|
1240.809
|
1121.181
|
2188.847
|
5377.634
|
4011.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.484
|
— |
0.565
|
— |
-0.338
|
— |
-0.385
|
0.290
|
— | — | — | — | — |
No JSON data available for plots.