SCN Proteipedia

Hg_chrom4_TN10mRNA_7723

Organism: Heterodera glycines Gene Locus: chr4:4968248-4973216 Feature type: polypeptide

Protein Sequence

Length: 1,126

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.568	1.281	1.437	0.398	1.702	1.002	0.624	1.377	1.224	1.152	1.332	1.045	0.789	0.717	1.559	1.091	0.757	0.754	0.615	0.47	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7282	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.921

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKR,KRRHMPSRVAKKRLS,KKRLSSKANANRDKKQ,RRSATNKKKPQKAKKT,KKTLAKKPRPTRKNRH,KKKPQKAKKTLAKKPRP,RRLTGSDDDRNVPKRGGK,KKQRGTKRRHMPSRVAKKR,KKPQKAKKTLAKKPRPTRK,KKDLATETKEAERAEKERR,PKRGGKVRSQKPKNKSKTEK	—	—	—	—	—	—	0.000	—	—	0.905	0.041	0.049	0.201	0.016	0.022	0.017	0.007	0.062	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000414	2.000	6.000	Hsc_gene_10095.t1;Hsc_gene_10096.t1;Hsc_gene_10099.t1;Hsc_gene_10104.t1;Hsc_gene_10104.t2;Hsc_gene_10104.t3	Hsc_gene_10096.t1;Hsc_gene_10099.t1;Hsc_gene_10104.t1;Hsc_gene_10104.t2;Hsc_gene_10104.t3	—	Q9U7E0.1 Transcriptional regulator ATRX homolog [Caenorhabditis elegans]	KHN84468.1 Transcriptional regulator ATRX -like protein [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016887\|GO:0140658	GO:0008150_0.920\|GO:0009987_0.789\|GO:0005575_0.746\|GO:0110165_0.740\|GO:0005622_0.709\|GO:0008152_0.676\|GO:0043170_0.676\|GO:0016020_0.666\|GO:0043226_0.659\|GO:0043229_0.644\|GO:0043227_0.598\|GO:0044238_0.596\|GO:0003674_0.594\|GO:0006139_0.568\|GO:0043231_0.566\|GO:0090304_0.561\|GO:0071840_0.517\|GO:0005634_0.515\|GO:0005488_0.511\|GO:0016043_0.509	IPR000330+594-936+\|IPR014001+587-834_611-826+\|IPR027417+575-876_879-1087_886-1126+\|IPR038718+564-875+\|IPR044574+441-1125+	SM00487+587-834+	PF00176+594-936+SNF2-related_domain	—	PTHR45797+441-1125+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	112-577;949-1031	3.000	1-111;578-948;1032-1126	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.577	129012.600	6.347	-3.500	37.300	7.993	58.970	41.030	19.183	18.117	45.648

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	2984.581	4297.342	3429.454	3089.139	3069.313	2930.869	2573.038	2268.148	5453.427	845.982	2820.602

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.555	-0.613	—	—	—	-0.178	-0.477	0.325	2.591	—	—	—	—

No JSON data available for plots.

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