Hg_chrom4_TN10mRNA_7726
Organism: Heterodera glycines Gene Locus: chr4:4979575-4980359 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 0.76 | 0.832 | 1.127 | 1.307 | 1.508 | 0.622 | 1.961 | 0.581 | 1.06 | 0.396 | 2.307 | 1.997 | 0.88 | 2.401 | 0.56 | 0.75 | 0.792 | 0.0 | 0.961 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7285
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.471
|
0.165
|
0.135
|
0.416
|
0.089
|
0.031
|
0.070
|
0.006
|
0.065
|
0.240
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003819
|
2.000
|
1.000
|
Hsc_gene_10157.t1
|
Hsc_gene_10157.t1
|
— |
Q5F4B3.1 Trimethyllysine dioxygenase, mitochondrial [Gallus gallus]
|
KAI3418817.1 Taurine catabolism dioxygenase TauD, TfdA [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.853|GO:0008150_0.714|GO:0003824_0.704|GO:0005575_0.702|GO:0110165_0.695|GO:0016491_0.663|GO:0016705_0.657|GO:0009987_0.651|GO:0016706_0.650|GO:0051213_0.650|GO:0005622_0.640|GO:0016020_0.617|GO:0043226_0.578|GO:0005737_0.570|GO:0008152_0.567|GO:0044237_0.546|GO:0009058_0.544|GO:0043227_0.543
|
IPR003819+20-150+|IPR042098+15-153+|IPR050411+18-152+
|
— |
PF02668+20-150+Taurine_catabolism_dioxygenase_TauD,_TfdA_family
|
— |
PTHR10696+18-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-153
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
17875.380
|
8.359
|
6.000
|
30.719
|
14.379
|
48.366
|
51.634
|
18.301
|
12.418
|
43.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
70.767
|
13.537
|
13.215
|
13.713
|
14.431
|
8.633
|
102.040
|
36.690
|
64.147
|
185.648
|
133.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.574
|
1.980
|
1.621
|
— | — | — | — | — |
No JSON data available for plots.