Hg_chrom4_TN10mRNA_7727
Organism: Heterodera glycines Gene Locus: chr4:4980412-4982467 Feature type: polypeptideProtein Sequence
Length: 611
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.637 | 0.952 | 0.282 | 0.355 | 0.923 | 0.448 | 2.455 | 1.6 | 0.951 | 0.719 | 0.481 | 1.318 | 1.668 | 1.202 | 1.567 | 1.744 | 0.471 | 1.259 | 0.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7286
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
20-90
|
0.961
|
— | — |
0.001
|
— | — |
0.696
|
0.418
|
0.133
|
0.480
|
0.266
|
0.056
|
0.159
|
0.038
|
0.111
|
0.396
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002072
|
4.000
|
0.000
|
0.000
|
— | — | — |
WP_333764851.1 reverse transcriptase domain-containing protein [Streptomyces sp. IBSBF 2390]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0008150_0.961|GO:0009987_0.912|GO:0003674_0.867|GO:0008152_0.811|GO:0043170_0.811|GO:0044238_0.800|GO:0009058_0.786|GO:0009059_0.783|GO:0044237_0.783|GO:0044249_0.783|GO:0006139_0.772|GO:0034654_0.762|GO:0090304_0.756|GO:0141187_0.750|GO:0003824_0.692|GO:0006259_0.679|GO:0071897_0.675|GO:0006310_0.673|GO:0016740_0.671|GO:0006278_0.670|GO:0006313_0.670|GO:0032196_0.670|GO:0016772_0.659|GO:0140640_0.655|GO:0003964_0.650|GO:0016779_0.650|GO:0034061_0.650|GO:0140097_0.650
|
IPR005135+136-252+|IPR036691+36-256_36-257+|IPR052560+42-400+
|
— |
PF14529+136-252+Endonuclease-reverse_transcriptase
|
— |
PTHR36688+42-400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
418-611
|
1.000
|
1-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
68155.540
|
10.447
|
35.000
|
22.913
|
12.439
|
55.155
|
44.845
|
15.548
|
7.365
|
56.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
42.553
|
12.876
|
13.796
|
18.970
|
34.801
|
28.560
|
43.546
|
31.439
|
115.703
|
30.395
|
66.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.844
|
— |
0.621
|
— |
0.617
|
— | — | — | — | — |
No JSON data available for plots.