Hg_chrom4_TN10mRNA_7732
Organism: Heterodera glycines Gene Locus: chr4:4986270-4986778 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.468 | 2.258 | 0.706 | 0.0 | 1.133 | 1.743 | 0.231 | 2.427 | 1.726 | 0.918 | 0.736 | 1.142 | 1.618 | 0.56 | 0.991 | 0.693 | 0.637 | 0.883 | 0.0 | 1.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7289
|
— | — |
1.667
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.397
|
0.338
|
0.006
|
0.438
|
0.078
|
0.108
|
0.020
|
0.003
|
0.018
|
0.576
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002065
|
3.000
|
1.000
|
Hsc_gene_10162.t1
|
Hsc_gene_10162.t1
|
— |
A0R647.1 Ferritin BfrB [Mycolicibacterium smegmatis MC2 155]
|
KAH7730419.1 FTN-2 protein [Aphelenchus avenae]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006826|GO:0006879|GO:0008199
|
GO:0005575_0.791|GO:0110165_0.783|GO:0005622_0.706|GO:0008150_0.683|GO:0005737_0.629|GO:0016020_0.629|GO:0043226_0.586|GO:0043229_0.575|GO:0003674_0.514|GO:0043227_0.508
|
IPR001519+20-90+|IPR008331+31-91+|IPR009040+23-103+|IPR009078+10-90+|IPR012347+5-101+
|
— |
PF00210+31-91+Ferritin-like_domain
|
— |
PTHR11431+20-90+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
98-103
|
1.000
|
1-97
|
8hct_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
11787.270
|
6.988
|
1.500
|
25.243
|
14.563
|
50.485
|
49.515
|
14.563
|
10.680
|
45.631
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
cyan
|
112.218
|
38.197
|
36.721
|
37.144
|
89.995
|
406.594
|
137.376
|
402.228
|
0.000
|
60.360
|
34.491
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.245
|
2.190
|
-1.556
|
— |
-1.405
|
— |
6.072
|
— | — | — |
No JSON data available for plots.