Hg_chrom4_TN10mRNA_7743
Organism: Heterodera glycines Gene Locus: chr4:5007268-5008863 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.265 | 0.714 | 1.354 | 0.705 | 1.549 | 0.539 | 0.604 | 0.94 | 1.47 | 0.458 | 1.244 | 1.762 | 0.639 | 1.295 | 1.381 | 0.891 | 1.099 | 1.627 | 0.8 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7298
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
70-99
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.099
|
0.142
|
0.021
|
0.120
|
0.526
|
0.383
|
0.202
|
0.022
|
0.802
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008527
|
1.000
|
1.000
|
Hsc_gene_10202.t1
|
Hsc_gene_10202.t1
|
— |
Q18593.2 Calcium homeostasis modulator protein [Caenorhabditis elegans]
|
KAI3418888.1 Clhm-1p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.961|GO:0009987_0.920|GO:0065007_0.891|GO:0050789_0.868|GO:0005575_0.836|GO:0110165_0.836|GO:0051179_0.828|GO:0051234_0.813|GO:0006810_0.811|GO:0071944_0.774|GO:0016020_0.772|GO:0005886_0.768|GO:0071705_0.712|GO:0015711_0.679|GO:0015748_0.674|GO:0006862_0.670|GO:0015865_0.670|GO:0015867_0.670|GO:0015868_0.670|GO:0015931_0.670|GO:0051503_0.670|GO:1901264_0.670|GO:1904669_0.670|GO:0003674_0.623|GO:0050794_0.535
|
IPR029569+14-247_15-266+
|
— |
PF14798+14-247+Calcium_homeostasis_modulator
|
— |
PTHR32261+15-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
285-331
|
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
37443.950
|
8.024
|
6.000
|
18.731
|
12.387
|
45.317
|
54.683
|
10.574
|
8.157
|
50.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
101.840
|
129.560
|
235.414
|
105.616
|
39.920
|
23.996
|
160.570
|
109.316
|
50.806
|
105.797
|
82.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
-0.432
|
-1.046
|
-1.433
|
-0.721
|
2.754
|
2.085
|
0.698
|
— | — | — | — | — |
No JSON data available for plots.