Hg_chrom4_TN10mRNA_7744
Organism: Heterodera glycines Gene Locus: chr4:5011667-5012860 Feature type: polypeptideProtein Sequence
Length: 239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 1.557 | 0.913 | 0.577 | 1.255 | 0.644 | 0.448 | 1.255 | 1.488 | 1.527 | 0.951 | 0.738 | 0.93 | 0.966 | 1.281 | 0.956 | 1.029 | 1.268 | 0.644 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7299
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.541
|
0.271
|
0.014
|
0.593
|
0.138
|
0.113
|
0.135
|
0.018
|
0.138
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008528
|
1.000
|
1.000
|
Hsc_gene_10204.t1
|
— | — |
O94760.3 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 [Homo sapiens]
|
KAH7700978.1 NG,NG-dimethylarginine dimethylaminohydrolase 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0003674_0.836|GO:0008152_0.790|GO:0065007_0.788|GO:0050789_0.774|GO:0003824_0.745|GO:0016787_0.682|GO:0046209_0.670|GO:2001057_0.670|GO:0016810_0.654|GO:0016403_0.650|GO:0016813_0.650|GO:0005575_0.619|GO:0110165_0.613|GO:0044238_0.612|GO:0009058_0.583|GO:0005622_0.559|GO:0032501_0.556|GO:0048518_0.542|GO:0019222_0.534|GO:0005737_0.526|GO:0009987_0.525|GO:0016020_0.520|GO:0009889_0.518|GO:0009893_0.517|GO:0009891_0.509|GO:0043226_0.506
|
IPR033199+1-128+
|
— | — | — |
PTHR12737+1-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-239
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
26825.840
|
7.375
|
3.000
|
27.615
|
7.950
|
49.791
|
50.209
|
15.063
|
12.552
|
50.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
642.905
|
300.704
|
441.057
|
413.612
|
485.406
|
707.979
|
768.904
|
945.399
|
824.084
|
671.000
|
736.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.325
|
0.324
|
— |
0.199
|
0.559
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.