Hg_chrom4_TN10mRNA_7745
Organism: Heterodera glycines Gene Locus: chr4:5013136-5014880 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.987 | 0.548 | 0.686 | 0.651 | 0.629 | 0.484 | 0.393 | 0.708 | 1.887 | 2.104 | 0.643 | 1.11 | 2.621 | 0.363 | 0.866 | 0.539 | 1.005 | 1.286 | 1.451 | 2.081 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7300
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
13-37
|
0.960
|
— | — | — | — |
0.000
|
— | — |
0.097
|
0.189
|
0.009
|
0.120
|
0.506
|
0.322
|
0.620
|
0.077
|
0.318
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008529
|
1.000
|
1.000
|
Hsc_gene_10205.t1
|
Hsc_gene_10205.t1
|
— |
Q09473.1 ER lumen protein-retaining receptor erd-2.2 [Caenorhabditis elegans]
|
KAH7694910.1 ER lumen protein retaining receptor [Aphelenchus avenae];KAH7706114.1 ER lumen protein retaining receptor [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006621|GO:0016020|GO:0046923
|
GO:0005575_0.901|GO:0110165_0.901|GO:0016020_0.867|GO:0005886_0.817|GO:0071944_0.817|GO:0005622_0.756|GO:0005737_0.756|GO:0005773_0.701|GO:0043226_0.701|GO:0043227_0.701|GO:0043229_0.701|GO:0043231_0.701|GO:0012505_0.668|GO:0008150_0.613|GO:0005783_0.559|GO:0009987_0.555
|
IPR000133+1-210_4-23_28-168_31-48_31-51_119-139_125-134_141-155_155-173_183-198+
|
— |
PF00810+28-168+ER_lumen_protein_retaining_receptor
|
— |
PTHR10585+1-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-212
|
7oye_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
24732.470
|
8.089
|
3.500
|
17.453
|
19.811
|
31.604
|
68.396
|
9.906
|
7.547
|
40.094
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
3094.282
|
775.904
|
1491.447
|
1862.530
|
3194.907
|
5863.146
|
2667.800
|
3710.955
|
1956.675
|
4732.469
|
3542.843
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
1.127
|
0.429
|
0.747
|
0.891
|
-1.128
|
-0.765
|
-0.335
|
-1.376
|
— | — | — | — |
No JSON data available for plots.