Hg_chrom4_TN10mRNA_7746
Organism: Heterodera glycines Gene Locus: chr4:5015067-5017460 Feature type: polypeptideProtein Sequence
Length: 494
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 1.083 | 1.031 | 0.558 | 0.911 | 1.038 | 0.771 | 0.709 | 1.08 | 1.34 | 0.951 | 1.072 | 1.631 | 1.129 | 0.868 | 1.186 | 1.029 | 0.797 | 1.713 | 1.012 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7301
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular|cell_membrane
|
nucleus
|
KKSPLGAPLCKWMKRMKY
|
— | — | — | — |
1-20
|
0.980
|
1.000
|
0.000
|
0.000
|
0.038
|
0.076
|
0.016
|
0.104
|
0.165
|
0.224
|
0.238
|
0.096
|
0.812
|
0.686
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008530
|
1.000
|
1.000
|
Hsc_gene_10206.t1
|
Hsc_gene_10206.t1
|
— |
Q19076.1 Intestinal acid phosphatase [Caenorhabditis elegans]
|
AFQ55439.1 acid phosphatase [Heterodera avenae];AVA09656.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0110165_0.817|GO:0016020_0.712|GO:0008150_0.698|GO:0009987_0.645|GO:0005622_0.605|GO:0003674_0.597|GO:0043226_0.557|GO:0043229_0.533|GO:0043227_0.518|GO:0005737_0.511
|
IPR000560+28-375_29-364+|IPR029033+27-422+|IPR033379+29-43+|IPR050645+16-413+
|
— |
PF00328+29-364+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+16-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-494
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
55611.280
|
6.605
|
0.500
|
23.077
|
12.955
|
46.356
|
53.644
|
11.943
|
11.134
|
50.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
584.548
|
21.354
|
242.620
|
765.218
|
742.424
|
516.940
|
1248.633
|
306.616
|
147.650
|
1005.231
|
637.696
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.281
|
5.028
|
1.765
|
— |
-0.507
|
1.283
|
-0.855
|
2.167
|
— | — | — | — | — |