Hg_chrom4_TN10mRNA_7751
Organism: Heterodera glycines Gene Locus: chr4:5024899-5025890 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.244 | 1.048 | 0.0 | 3.841 | 1.266 | 0.441 | 1.235 | 0.549 | 0.779 | 1.808 | 1.695 | 0.686 | 0.158 | 2.016 | 0.529 | 0.607 | 0.436 | 1.266 | 0.121 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7305
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
— |
RRRRMGHLEVHKRWKQK,KRDEFRRASNELDRRRRMG,KKEQKSEEKVEEEDKEEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.446
|
0.243
|
0.016
|
0.510
|
0.148
|
0.064
|
0.065
|
0.009
|
0.295
|
0.630
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002074
|
1.000
|
3.000
|
Hsc_gene_10210.t1;Hsc_gene_20999.t1;Hsc_gene_20999.t2
|
Hsc_gene_20999.t1;Hsc_gene_20999.t2
|
— | — |
KAI3418896.1 hypothetical protein GPALN_007994 [Globodera pallida]
|
No
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
61-243
|
1.000
|
1-60
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
29303.120
|
4.792
|
-14.000
|
53.086
|
6.996
|
70.782
|
29.218
|
24.280
|
28.807
|
32.099
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
594.962
|
1562.277
|
1692.012
|
426.270
|
128.145
|
349.500
|
131.400
|
2111.897
|
156.676
|
84.888
|
115.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.011
|
-1.880
|
-1.766
|
1.462
|
-1.401
|
2.498
|
-3.866
|
— | — | — | — | — |
No JSON data available for plots.