Hg_chrom4_TN10mRNA_7754
Organism: Heterodera glycines Gene Locus: chr4:5029706-5030321 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.423 | 1.903 | 0.992 | 0.313 | 1.364 | 1.166 | 0.649 | 3.636 | 1.212 | 0.737 | 1.102 | 0.535 | 0.505 | 0.699 | 0.742 | 0.909 | 0.894 | 1.791 | 2.797 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7307
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.589
|
0.447
|
0.054
|
0.574
|
0.100
|
0.178
|
0.077
|
0.024
|
0.124
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003829
|
2.000
|
1.000
|
Hsc_gene_10212.t1
|
Hsc_gene_10212.t1
|
— |
P34328.1 Heat shock protein Hsp-12.2 [Caenorhabditis elegans]
|
KAF7634510.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.820|GO:0110165_0.807|GO:0008150_0.796|GO:0005622_0.744|GO:0005737_0.667|GO:0009987_0.616|GO:0003674_0.606|GO:0050896_0.565|GO:0065007_0.557|GO:0050789_0.550|GO:0005488_0.533|GO:0043226_0.506
|
IPR001436+13-110+|IPR002068+16-110_29-110+|IPR008978+15-109_19-110+
|
— |
PF00011+29-110+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+13-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-110
|
1.000
|
1-69
|
2wj7_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
12600.070
|
6.694
|
1.000
|
31.818
|
13.636
|
56.364
|
43.636
|
18.182
|
13.636
|
50.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2381.440
|
2698.803
|
5534.982
|
2335.286
|
2214.258
|
1493.421
|
760.353
|
1939.657
|
958.016
|
3334.005
|
2315.724
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
-0.346
|
-1.135
|
— |
-0.553
|
-0.962
|
0.271
|
-1.206
|
— | — | — | — | — |
No JSON data available for plots.