Hg_chrom4_TN10mRNA_7759
Organism: Heterodera glycines Gene Locus: chr4:5038570-5040762 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 0.844 | 1.023 | 0.814 | 1.331 | 1.07 | 0.605 | 0.998 | 0.766 | 1.275 | 1.375 | 2.562 | 1.714 | 0.558 | 1.63 | 0.804 | 0.625 | 0.907 | 1.815 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7312
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRRK,RRRR,KMKREREIRGKRKKEEREKERGKEAETKGMGGRKAK
|
3-28
|
0.818
|
— | — | — | — |
0.000
|
— | — |
0.085
|
0.066
|
0.003
|
0.171
|
0.261
|
0.176
|
0.860
|
0.007
|
0.157
|
0.452
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008537
|
1.000
|
1.000
|
Hsc_gene_10216.t1
|
Hsc_gene_10216.t1
|
— | — |
KAI1710202.1 core-2/I-Branching enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.808|GO:0003674_0.733|GO:0009987_0.626|GO:0005575_0.604|GO:0110165_0.598|GO:0003824_0.576|GO:0016740_0.552|GO:0016020_0.549|GO:0016757_0.530|GO:0016758_0.530|GO:0005622_0.521|GO:0008194_0.521|GO:0008375_0.521
|
IPR003406+140-418+
|
— |
PF02485+140-418+Core-2/I-Branching_enzyme
|
— |
PTHR46671+50-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
483-551
|
1.000
|
1-482
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
64804.010
|
9.588
|
24.500
|
32.668
|
12.886
|
49.909
|
50.091
|
19.056
|
13.612
|
40.653
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
882.355
|
504.811
|
539.535
|
178.646
|
65.153
|
1541.535
|
944.728
|
105.737
|
2922.009
|
213.743
|
1374.428
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.636
|
-1.486
|
-1.484
|
4.575
|
-0.694
|
-3.976
|
3.305
|
3.686
|
-3.865
|
— | — | — |
No JSON data available for plots.