Hg_chrom4_TN10mRNA_7761
Organism: Heterodera glycines Gene Locus: chr4:5044307-5048636 Feature type: polypeptideProtein Sequence
Length: 831
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.035 | 1.072 | 0.415 | 1.284 | 1.389 | 0.415 | 1.203 | 1.364 | 1.496 | 1.203 | 1.274 | 1.571 | 0.509 | 1.105 | 1.117 | 0.69 | 0.948 | 0.37 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7314
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.277
|
0.059
|
0.016
|
0.532
|
0.137
|
0.567
|
0.359
|
0.016
|
0.314
|
0.195
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008538
|
1.000
|
1.000
|
Hsc_gene_10220.t1
|
Hsc_gene_10220.t1
|
— |
Q20678.2 Exocyst complex component 1 [Caenorhabditis elegans]
|
KAF7634516.1 Sec3-PIP2_bind domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000145|GO:0006887
|
GO:0008150_0.818|GO:0009987_0.642|GO:0005575_0.621|GO:0110165_0.613|GO:0005622_0.560
|
IPR019160+190-314+|IPR028258+31-119_31-122+|IPR048628+510-807+
|
SM01313+31-122+
|
PF09763+190-314+Exocyst_complex_component_Sec3,_coiled-coil|PF15277+31-119+Exocyst_complex_component_SEC3_N-terminal_PIP2_binding_PH|PF20654+510-807+Exocyst_complex_component_Sec3,_C-terminal
|
— |
PTHR16092+5-828+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-831
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
95509.490
|
7.268
|
8.000
|
29.362
|
11.552
|
51.264
|
48.736
|
15.764
|
13.598
|
42.599
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
orange
|
1773.687
|
3118.663
|
2081.608
|
1699.598
|
1622.495
|
1575.783
|
2834.598
|
1907.082
|
1407.108
|
1139.613
|
1254.254
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.814
|
-1.013
|
-0.183
|
-0.099
|
— |
0.857
|
— |
0.713
|
— | — | — | — | — |
No JSON data available for plots.