Hg_chrom4_TN10mRNA_7762
Organism: Heterodera glycines Gene Locus: chr4:5048941-5051255 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 0.92 | 0.519 | 1.44 | 0.476 | 0.394 | 0.89 | 0.33 | 1.123 | 1.663 | 0.333 | 2.844 | 1.893 | 0.634 | 0.628 | 1.507 | 0.937 | 1.066 | 2.198 | 1.293 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7315
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.492
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|golgi_apparatus
|
— | — | — | — |
8-66
|
0.931
|
— | — |
0.008
|
— | — |
0.147
|
0.091
|
0.005
|
0.185
|
0.441
|
0.448
|
0.740
|
0.003
|
0.614
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002076
|
2.000
|
2.000
|
Hsc_gene_10221.t1;Hsc_gene_10221.t2
|
Hsc_gene_10221.t1;Hsc_gene_10221.t2
|
— |
A7S4N4.1 Probable serine incorporator [Nematostella vectensis]
|
KAH7730546.1 TDE2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.854|GO:0110165_0.854|GO:0071944_0.826|GO:0005886_0.819|GO:0016020_0.819|GO:0008150_0.813|GO:0009987_0.760|GO:0003674_0.557|GO:0005622_0.521|GO:0005737_0.521|GO:0005773_0.509|GO:0043226_0.509|GO:0043227_0.509|GO:0043229_0.509|GO:0043231_0.509
|
IPR005016+15-452+
|
— |
PF03348+15-452+Serine_incorporator_(Serinc)
|
— |
PTHR10383+15-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
50133.710
|
6.210
|
-0.500
|
11.648
|
14.725
|
33.407
|
66.593
|
5.934
|
5.714
|
53.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2869.143
|
2613.572
|
2812.115
|
2567.468
|
2935.703
|
3685.589
|
3627.681
|
4393.648
|
2241.736
|
2382.781
|
2322.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.123
|
-0.163
|
— |
0.161
|
0.343
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.