Hg_chrom4_TN10mRNA_7765
Organism: Heterodera glycines Gene Locus: chr4:5055174-5064758 Feature type: polypeptideProtein Sequence
Length: 1,325
(Signal peptide: 1-47)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.079 | 0.93 | 0.974 | 0.547 | 1.107 | 1.567 | 0.611 | 1.509 | 0.805 | 1.295 | 0.629 | 1.11 | 1.719 | 0.711 | 1.325 | 1.423 | 0.68 | 0.846 | 1.103 | 0.622 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7317
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
golgi_apparatus
|
nucleus
|
RKRK
|
— | — | — | — |
1-47
|
0.612
|
0.627
|
2.000
|
2.000
|
0.131
|
0.131
|
0.043
|
0.226
|
0.464
|
0.399
|
0.584
|
0.177
|
0.377
|
0.336
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003830
|
1.000
|
2.000
|
Hsc_gene_10223.t1;Hsc_gene_10223.t2
|
Hsc_gene_10223.t1;Hsc_gene_10223.t2
|
— |
P34374.2 Voltage-dependent calcium channel unc-36 [Caenorhabditis elegans]
|
UJT32167.1 voltage-dependent calcium channel unc-36 [Heterodera elachista]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.885|GO:0005575_0.791|GO:0110165_0.786|GO:0009987_0.743|GO:0071944_0.730|GO:0016020_0.728|GO:0005886_0.706|GO:0051179_0.618|GO:0003674_0.601|GO:0051234_0.597|GO:0006810_0.595
|
IPR002035+290-532_292-531_293-386+|IPR013608+152-263+|IPR036465+290-529_291-529+|IPR051173+54-1279+
|
SM00327+290-532+
|
PF08399+152-263+VWA_N-terminal|PF13519+293-386+von_Willebrand_factor_type_A_domain
|
— |
PTHR10166+54-1279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1233-1289
|
2.000
|
1-1232;1290-1325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
149140.840
|
6.589
|
2.000
|
25.660
|
12.755
|
49.887
|
50.113
|
13.660
|
12.000
|
48.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
2280.280
|
2198.718
|
5121.602
|
3004.718
|
1740.522
|
1421.457
|
1299.864
|
3638.720
|
1720.952
|
1775.911
|
1752.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.991
|
0.314
|
-0.661
|
-0.819
|
-0.278
|
— |
1.250
|
-1.341
|
— | — | — | — | — |