SCN Proteipedia

Hg_chrom4_TN10mRNA_7766

Organism: Heterodera glycines Gene Locus: chr4:5067686-5073485 Feature type: polypeptide

Protein Sequence

Length: 1,031

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.049	0.857	0.617	0.502	1.099	0.671	0.947	0.873	1.272	1.285	0.794	1.084	1.913	0.746	1.366	1.289	0.827	1.073	0.821	0.456	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7318	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.902

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRMNKGQVQVKKEKRRRKS,KRRMNKGQVQVKKEKRRRK	47-88	0.775	—	—	—	—	0.000	—	—	0.110	0.166	0.012	0.170	0.400	0.409	0.348	0.004	0.514	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008540	1.000	1.000	Hsc_gene_10225.t1	Hsc_gene_10225.t1	—	Q9BMK9.1 Chloride channel protein clh-3 [Caenorhabditis elegans]	KAI1720213.1 voltage gated chloride channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085	GO:0008150_0.934\|GO:0009987_0.885\|GO:0005575_0.861\|GO:0110165_0.861\|GO:0016020_0.835\|GO:0051179_0.818\|GO:0006810_0.812\|GO:0051234_0.812\|GO:0071944_0.780\|GO:0005886_0.768\|GO:0003674_0.760\|GO:0055085_0.718\|GO:0006811_0.667\|GO:0034220_0.662\|GO:0005215_0.628\|GO:0022857_0.628\|GO:0098660_0.611\|GO:0006820_0.593\|GO:0015698_0.593\|GO:0006821_0.590\|GO:0015075_0.575\|GO:0015267_0.575\|GO:0022803_0.575\|GO:0005216_0.569\|GO:0015318_0.563\|GO:0098661_0.551\|GO:0098656_0.550\|GO:1902476_0.549\|GO:0008509_0.535\|GO:0015103_0.534\|GO:0005253_0.532\|GO:0015108_0.532\|GO:0005254_0.530	IPR001807+132-533_144-161_175-194_232-251_443-463_485-501_502-521_540-554+\|IPR014743+58-555+\|IPR046342+555-673_558-845_741-849+\|IPR050970+41-867+	—	PF00654+132-533+Voltage_gated_chloride_channel	G3DSA:1.10.3080.10:FF:000022+64-554+Chloride_channel_protein\|G3DSA:3.10.580.10:FF:000032+754-849+Chloride_channel_protein	PTHR45720+41-867+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	629-675;850-1031	2.000	1-628;676-849	8ta2_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.858	113468.460	9.468	29.000	23.666	11.251	44.035	55.965	13.676	9.990	50.533

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	turquoise	599.453	435.403	491.838	397.274	235.499	416.310	1141.669	681.510	77.497	1139.672	684.455

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.269	-0.200	-0.787	0.837	1.467	0.611	0.886	-3.999	—	—	—	—

No JSON data available for plots.

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