SCN Proteipedia

Hg_chrom4_TN10mRNA_7769

Organism: Heterodera glycines Gene Locus: chr4:5082198-5088053 Feature type: polypeptide

Protein Sequence

Length: 1,284

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.897	0.616	0.736	0.322	0.649	2.197	1.252	0.74	0.727	1.2	0.909	0.779	1.623	1.258	0.683	1.48	1.366	0.637	0.479	0.435	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7321	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKLLHHGTKETKKRRYL,RRLKVVPTIKDLFAKYKQK	—	—	—	—	—	—	0.000	—	—	0.833	0.049	0.007	0.320	0.069	0.160	0.043	0.202	0.088	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008542	1.000	1.000	Hsc_gene_10228.t1	Hsc_gene_10228.t1	—	G5EEH9.1 Nuclear pore complex protein Nup98-Nup96 [Caenorhabditis elegans]	KAI3418912.1 Nuclear pore complex protein Nup98-Nup96 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005643\|GO:0006913\|GO:0017056	GO:0005575_0.948\|GO:0110165_0.944\|GO:0016020_0.887\|GO:0005622_0.873\|GO:0043226_0.849\|GO:0008150_0.831\|GO:0043229_0.826\|GO:0043227_0.802\|GO:0009987_0.793\|GO:0043231_0.773\|GO:0071944_0.710\|GO:0003674_0.701\|GO:0005886_0.699\|GO:0005737_0.682\|GO:0005634_0.652\|GO:0051179_0.614\|GO:0051234_0.590\|GO:0006810_0.585\|GO:0005488_0.565\|GO:0005773_0.552\|GO:0012505_0.548\|GO:0065007_0.546\|GO:0051641_0.540\|GO:0050789_0.532\|GO:0051649_0.517\|GO:0046907_0.505\|GO:0032991_0.501	IPR007230+805-890+\|IPR021967+1166-1279+\|IPR025574+58-131_253-321_377-444_446-529+\|IPR036903+765-896_808-897+\|IPR037665+135-901+	—	PF04096+808-895+Nucleoporin_autopeptidase\|PF12110+1166-1279+Nuclear_protein_96\|PF13634+58-131_253-321_377-444_446-529+Nucleoporin_FG_repeat_region\|PF21240+208-245+Nup98,_Gle2-binding_sequence	G3DSA:1.10.10.2360:FF:000001+196-250+Nuclear_pore_complex_protein_Nup98-Nup96	PTHR23198+135-901+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-529;696-772	2.000	530-695;773-1284	4owr_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.935	137021.970	9.415	27.500	18.769	9.424	48.676	51.324	10.826	7.944	55.296

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	2015.591	2828.343	1850.275	2494.020	2660.684	2233.065	3908.057	1343.199	729.800	1776.745	1328.054

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.842	-0.319	0.540	—	-0.238	0.818	-0.836	1.682	—	—	—	—	—

No JSON data available for plots.

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