Hg_chrom4_TN10mRNA_7773
Organism: Heterodera glycines Gene Locus: chr4:5099930-5100893 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 0.263 | 0.924 | 1.169 | 1.036 | 1.594 | 1.143 | 2.542 | 1.758 | 0.993 | 0.171 | 0.332 | 1.412 | 0.652 | 1.73 | 0.565 | 1.111 | 1.027 | 2.173 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7325
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.376
|
0.237
|
0.029
|
0.488
|
0.357
|
0.585
|
0.341
|
0.015
|
0.312
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008544
|
1.000
|
1.000
|
Hsc_gene_10232.t2
|
Hsc_gene_10232.t1;Hsc_gene_10232.t2
|
— |
Q6DGZ1.1 B9 domain-containing protein 2 [Danio rerio]
|
KAI1705334.1 ciliary basal body-associated, b9 protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.858|GO:0110165_0.852|GO:0016020_0.748|GO:0005622_0.746|GO:0008150_0.725|GO:0071944_0.718|GO:0005886_0.695|GO:0043226_0.690|GO:0043227_0.677|GO:0009987_0.656|GO:0032991_0.600|GO:0098590_0.561|GO:0042995_0.556|GO:0120025_0.556|GO:0005929_0.546|GO:0030990_0.546|GO:0051179_0.511|GO:0006810_0.510|GO:0051234_0.510|GO:0071840_0.508|GO:0016043_0.504
|
IPR010796+2-175_3-120_5-166+
|
— |
PF07162+5-166+Ciliary_basal_body-associated,_B9_protein
|
— |
PTHR12968+2-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
20076.780
|
6.754
|
1.500
|
25.989
|
15.254
|
44.068
|
55.932
|
14.689
|
11.299
|
46.893
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
108.987
|
126.443
|
212.730
|
131.435
|
22.758
|
14.426
|
19.862
|
181.811
|
26.156
|
191.150
|
120.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
— |
-0.586
|
-2.561
|
— | — |
3.557
|
-3.053
|
— | — | — | — |
6.200
|
No JSON data available for plots.