SCN Proteipedia

Hg_chrom4_TN10mRNA_7780

Organism: Heterodera glycines Gene Locus: chr4:5118489-5122697 Feature type: polypeptide

Protein Sequence

Length: 820

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.837	1.191	0.776	0.883	1.26	1.501	0.581	1.707	0.949	0.939	0.758	1.865	1.524	1.243	1.394	1.847	0.68	0.48	0.094	0.179	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7331	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.596

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRKRE	—	—	37-61	0.987	—	—	0.000	—	—	0.827	0.083	0.016	0.436	0.041	0.037	0.051	0.024	0.066	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008547	1.000	1.000	Hsc_gene_10239.t1	—	—	Q9Y5X4.1 Photoreceptor-specific nuclear receptor [Homo sapiens]	KAH7728109.1 photoreceptor-specific nuclear receptor [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.899\|GO:0009987_0.855\|GO:0065007_0.813\|GO:0003674_0.811\|GO:0005488_0.811\|GO:0050789_0.808\|GO:0050794_0.805\|GO:0005575_0.801\|GO:0110165_0.793\|GO:0005622_0.768\|GO:0043226_0.763\|GO:0097159_0.751\|GO:0003676_0.750\|GO:0043229_0.741\|GO:0008152_0.727\|GO:0019222_0.727\|GO:0031323_0.727\|GO:0044237_0.727\|GO:0044238_0.723\|GO:0080090_0.723\|GO:0043170_0.721\|GO:0060255_0.721\|GO:0003677_0.714\|GO:0043565_0.714\|GO:0009058_0.705\|GO:0009889_0.705\|GO:0031326_0.705\|GO:0044249_0.705\|GO:0009059_0.703\|GO:0010556_0.703\|GO:0010467_0.702\|GO:0010468_0.702\|GO:0006139_0.701\|GO:0016070_0.701\|GO:0032774_0.701\|GO:0034654_0.701\|GO:0090304_0.701\|GO:0141187_0.701\|GO:0019219_0.682\|GO:0051252_0.681\|GO:0006351_0.677\|GO:0006355_0.672\|GO:2001141_0.672\|GO:0032501_0.655\|GO:0016020_0.629\|GO:0006357_0.621\|GO:0006366_0.621\|GO:0032502_0.617\|GO:0048856_0.617\|GO:0043227_0.579\|GO:0003690_0.571\|GO:1990837_0.571\|GO:0007275_0.569\|GO:0005634_0.555\|GO:0043231_0.555\|GO:0048731_0.546\|GO:0140110_0.525\|GO:0000976_0.520\|GO:0001067_0.520\|GO:0043228_0.512\|GO:0050896_0.511\|GO:0043232_0.509	IPR000536+602-815_632-793_637-786+\|IPR001628+463-535_463-539_465-534_466-482_466-492_482-497_516-524_524-532+\|IPR001723+528-538_638-659_659-675_717-732_774-791+\|IPR013088+459-556+\|IPR035500+533-813_601-816+\|IPR050274+465-812+	SM00399+463-535+\|SM00430+637-786+	PF00104+632-793+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+465-534+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000028+460-557+Nuclear_receptor_subfamily_2,_group_E,_member_3	PTHR24083+465-812+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-421	1.000	422-820	7xv6_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.881	91316.350	7.513	14.000	27.073	9.634	55.122	44.878	15.244	11.829	50.732

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkorange	1025.126	572.011	586.397	249.876	113.352	144.703	291.087	1169.217	61.792	3266.091	1892.820

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.194	-1.332	-1.122	-1.170	—	1.019	2.914	-1.866	—	—	—	—	—

No JSON data available for plots.

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