Hg_chrom4_TN10mRNA_7783
Organism: Heterodera glycines Gene Locus: chr4:5129857-5133287 Feature type: polypeptideProtein Sequence
Length: 756
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.354 | 0.818 | 0.456 | 0.816 | 0.882 | 0.866 | 1.323 | 0.999 | 1.216 | 0.2 | 1.167 | 2.058 | 1.196 | 1.134 | 1.228 | 1.019 | 1.162 | 1.628 | 0.856 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7334
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.450
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-18
|
0.971
|
0.999
|
1.000
|
1.000
|
0.078
|
0.023
|
0.008
|
0.262
|
0.190
|
0.641
|
0.463
|
0.072
|
0.834
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008549
|
1.000
|
1.000
|
Hsc_gene_10241.t1
|
Hsc_gene_10241.t1
|
— |
Q20826.1 Neuroligin-like protein glit-1 [Caenorhabditis elegans]
|
KAI1730422.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.907|GO:0009987_0.845|GO:0005575_0.779|GO:0110165_0.767|GO:0003674_0.708|GO:0065007_0.706|GO:0016020_0.656|GO:0050896_0.569|GO:0050789_0.565|GO:0071944_0.554|GO:0005886_0.538|GO:0051716_0.511
|
IPR002018+98-632+|IPR029058+42-660_90-659+|IPR051093+37-674+
|
— |
PF00135+98-632+Carboxylesterase_family
|
— |
PTHR43903+37-674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
728-756
|
1.000
|
1-727
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
84415.410
|
5.663
|
-9.000
|
18.915
|
15.079
|
42.989
|
57.011
|
9.524
|
9.392
|
54.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
570.128
|
1727.068
|
405.111
|
266.964
|
332.484
|
330.365
|
766.303
|
585.585
|
195.877
|
692.196
|
479.488
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.324
|
-2.831
|
-0.491
|
0.284
|
— |
1.224
|
0.722
|
0.530
|
— | — | — | — | — |