Hg_chrom4_TN10mRNA_7784
Organism: Heterodera glycines Gene Locus: chr4:5133712-5134419 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.116 | 1.302 | 1.309 | 2.207 | 0.8 | 0.821 | 0.667 | 1.6 | 1.067 | 0.541 | 0.848 | 1.412 | 1.111 | 1.077 | 0.327 | 1.486 | 0.393 | 1.455 | 1.231 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7335
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.931
|
0.120
|
0.013
|
0.527
|
0.057
|
0.090
|
0.065
|
0.026
|
0.030
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008550
|
1.000
|
1.000
|
Hsc_gene_10242.t1
|
Hsc_gene_10242.t1
|
— |
Q9Z2V5.3 Histone deacetylase 6 [Mus musculus]
|
KAI3409969.1 Histone deacetylase 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.838|GO:0005575_0.775|GO:0110165_0.765|GO:0005622_0.668|GO:0009987_0.661|GO:0050896_0.606|GO:0065007_0.604|GO:0050789_0.597|GO:0008152_0.585|GO:0003674_0.574|GO:0050794_0.573|GO:0043170_0.558|GO:0016020_0.541|GO:0043226_0.519|GO:0005737_0.516|GO:0043229_0.508
|
IPR001607+18-118_39-88_40-100+|IPR013083+14-121+
|
SM00290+39-88+
|
PF02148+40-100+Zn-finger_in_ubiquitin-hydrolases_and_other_protein
|
G3DSA:3.30.40.10:FF:000342+14-120+Histone_deacetylase_6
|
PTHR47665+11-101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
118-125
|
1.000
|
1-117
|
5g0f_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
13516.240
|
4.796
|
-4.000
|
22.400
|
11.200
|
44.000
|
56.000
|
10.400
|
12.000
|
62.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
469.610
|
274.095
|
309.549
|
353.512
|
467.828
|
400.663
|
508.702
|
304.691
|
131.940
|
973.447
|
612.801
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.230
|
0.301
|
0.372
|
-0.208
|
0.355
|
-0.502
|
0.883
|
-3.008
|
— | — | — | — |
No JSON data available for plots.