Hg_chrom4_TN10mRNA_7786
Organism: Heterodera glycines Gene Locus: chr4:5138919-5146683 Feature type: polypeptideProtein Sequence
Length: 1,723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.012 | 1.024 | 0.64 | 1.228 | 0.893 | 0.511 | 0.987 | 1.341 | 1.843 | 0.967 | 1.502 | 1.032 | 0.804 | 1.066 | 1.094 | 0.628 | 0.976 | 0.402 | 0.597 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7337
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKNREKGILSEKQKKA,KKAVEQELKIEREIRSRLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.492
|
0.130
|
0.022
|
0.579
|
0.145
|
0.146
|
0.285
|
0.048
|
0.161
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008551
|
1.000
|
1.000
|
Hsc_gene_10243.t1
|
Hsc_gene_10243.t1
|
— |
Q92616.7 Stalled ribosome sensor GCN1 [Homo sapiens]
|
KAI1729378.1 protein ILITYHIA [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.960|GO:0005575_0.927|GO:0110165_0.926|GO:0005622_0.882|GO:0009987_0.796|GO:0003674_0.745|GO:0005737_0.694|GO:0050896_0.687|GO:0065007_0.685|GO:0005488_0.667|GO:0050789_0.666|GO:0050794_0.639|GO:0006950_0.621|GO:0051716_0.538|GO:0005515_0.514|GO:0016020_0.514|GO:0043226_0.509
|
IPR000357+793-821_953-982+|IPR011989+666-984_985-1155_1219-1549_1551-1716+|IPR016024+275-745_612-1695+|IPR021133+755-791_911-949_953-990+|IPR034085+660-890+
|
SM01349+660-890+
|
PF02985+793-821_953-982+HEAT_repeat
|
— |
PTHR23346+58-1693+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-1723
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
192073.260
|
6.196
|
-7.000
|
26.582
|
8.241
|
45.908
|
54.092
|
13.581
|
13.001
|
47.069
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
3533.413
|
2462.288
|
3009.452
|
4103.752
|
4961.618
|
4153.913
|
4025.705
|
2184.660
|
2334.082
|
4370.102
|
3497.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.600
|
0.556
|
0.242
|
-0.241
|
— |
-1.033
|
1.025
|
— | — | — | — | — |
No JSON data available for plots.