Hg_chrom4_TN10mRNA_7790
Organism: Heterodera glycines Gene Locus: chr4:5169000-5171326 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.633 | 0.943 | 0.461 | 1.087 | 2.144 | 0.478 | 1.839 | 0.855 | 0.994 | 0.659 | 1.082 | 0.836 | 1.479 | 1.263 | 1.672 | 0.932 | 0.76 | 0.257 | 0.393 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7341
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKRAGRSSTSPSRQRRRQQ,KRAVATSNDVAAILRKRME
|
33-55
|
0.847
|
— | — | — | — |
0.000
|
— | — |
0.251
|
0.108
|
0.006
|
0.640
|
0.068
|
0.285
|
0.252
|
0.045
|
0.336
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008553
|
1.000
|
1.000
|
Hsc_gene_10248.t1
|
Hsc_gene_10248.t1
|
— |
Q9Y6W5.3 Actin-binding protein WASF2 [Homo sapiens]
|
KAI3418930.1 WH2 domain-containing protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779|GO:0005856|GO:0030036
|
GO:0008150_0.956|GO:0005575_0.932|GO:0110165_0.927|GO:0009987_0.913|GO:0065007_0.842|GO:0050789_0.841|GO:0005622_0.762|GO:0050794_0.750|GO:0016020_0.747|GO:0016043_0.724|GO:0071840_0.724|GO:0043226_0.686|GO:0005737_0.604|GO:0043229_0.601|GO:0048518_0.579|GO:0048522_0.567|GO:0006996_0.566|GO:0032502_0.551|GO:0048856_0.551|GO:0043227_0.536|GO:0007010_0.535|GO:0030029_0.517|GO:0030036_0.517
|
IPR003124+531-548+|IPR028288+1-216+
|
SM00246+531-548+
|
— | — |
PTHR12902+1-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
179-598
|
1.000
|
1-178
|
4n78_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
66814.890
|
6.811
|
4.000
|
25.920
|
8.361
|
58.696
|
41.304
|
14.214
|
11.706
|
53.177
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
733.826
|
868.461
|
751.718
|
683.865
|
808.991
|
1078.294
|
2295.830
|
955.570
|
355.181
|
153.078
|
239.693
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.438
|
-0.482
|
— |
0.211
|
0.429
|
1.101
|
-0.280
|
1.407
|
— | — | — | — | — |
No JSON data available for plots.