Hg_chrom4_TN10mRNA_7791
Organism: Heterodera glycines Gene Locus: chr4:5171571-5173607 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 0.851 | 1.22 | 0.736 | 0.965 | 1.329 | 0.581 | 1.067 | 1.694 | 1.483 | 0.924 | 1.614 | 1.27 | 0.645 | 1.244 | 1.002 | 1.15 | 0.508 | 0.938 | 0.628 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7342
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
59-79
|
0.901
|
— | — | — | — |
0.000
|
— | — |
0.473
|
0.642
|
0.039
|
0.408
|
0.064
|
0.137
|
0.029
|
0.270
|
0.087
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002077
|
1.000
|
3.000
|
Hsc_gene_10249.t1;Hsc_gene_24959.t1;Hsc_gene_5612.t1
|
Hsc_gene_10249.t1
|
— |
O14230.1 Farnesyl pyrophosphate synthase [Schizosaccharomyces pombe 972h-]
|
KAI1722186.1 polyprenyl synthetase domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004659|GO:0008299|GO:0016765
|
GO:0008150_0.812|GO:0005575_0.676|GO:0110165_0.667|GO:0009987_0.643|GO:0008152_0.594|GO:0005622_0.581|GO:0003674_0.579|GO:0009058_0.563|GO:0016020_0.551|GO:0005737_0.542|GO:0044238_0.539|GO:0044237_0.533|GO:0043226_0.514|GO:0043229_0.510|GO:0044249_0.509
|
IPR000092+51-210_213-273+|IPR008949+11-211_44-327_212-328+|IPR033749+105-119+|IPR039702+212-328+
|
— |
PF00348+51-210_213-273+Polyprenyl_synthetase
|
— |
PTHR11525+212-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
37203.690
|
7.067
|
2.500
|
26.829
|
10.061
|
49.695
|
50.305
|
14.329
|
12.500
|
45.427
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkorange
|
661.837
|
316.166
|
373.842
|
383.062
|
483.603
|
445.945
|
902.839
|
465.384
|
260.408
|
1436.164
|
932.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.304
|
— |
1.028
|
— |
1.099
|
— | — | — | — | — |
No JSON data available for plots.