SCN Proteipedia

Hg_chrom4_TN10mRNA_7792

Organism: Heterodera glycines Gene Locus: chr4:5173841-5178538 Feature type: polypeptide

Protein Sequence

Length: 968

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.877	0.841	1.014	0.57	0.895	0.848	0.812	1.291	1.423	1.354	0.642	1.762	1.119	1.172	1.181	1.166	0.83	1.08	0.397	0.912	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7343	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.758

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	4-31	0.997	23-73	0.999	—	—	0.000	—	—	0.128	0.765	0.248	0.228	0.056	0.218	0.072	0.060	0.083	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008554	1.000	1.000	Hsc_gene_10250.t1	Hsc_gene_10250.t1	—	A8E657.1 Alpha-aminoadipic semialdehyde synthase, mitochondrial [Bos taurus]	KAI1715545.1 saccharopine dehydrogenase NADP binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.946\|GO:0005575_0.893\|GO:0110165_0.887\|GO:0009987_0.879\|GO:0008152_0.807\|GO:0005622_0.796\|GO:0044238_0.780\|GO:0044237_0.774\|GO:0009058_0.760\|GO:0005737_0.759\|GO:0044249_0.735\|GO:0044281_0.715\|GO:0006082_0.690\|GO:0019752_0.690\|GO:0043436_0.690\|GO:0044283_0.681\|GO:0006520_0.679\|GO:0016053_0.677\|GO:0046394_0.677\|GO:1901605_0.677\|GO:0170033_0.676\|GO:0170039_0.676\|GO:0008652_0.674\|GO:1901607_0.674\|GO:0006553_0.670\|GO:0009066_0.670\|GO:0009067_0.670\|GO:0009085_0.670\|GO:0170034_0.670\|GO:0170038_0.670\|GO:0003674_0.559	IPR005097+519-635+\|IPR007698+221-432_384-489+\|IPR007886+51-180_51-181+\|IPR032095+639-958+\|IPR036291+516-695+\|IPR051168+51-964+	SM01002+221-432+\|SM01003+51-181+	PF01262+384-489+Alanine_dehydrogenase/PNT,_C-terminal_domain\|PF03435+519-635+Saccharopine_dehydrogenase_NADP_binding_domain\|PF05222+51-180+Alanine_dehydrogenase/PNT,_N-terminal_domain\|PF16653+639-958+Saccharopine_dehydrogenase_C-terminal_domain	G3DSA:3.30.360.10:FF:000008+641-773+Alpha-aminoadipic_semialdehyde_synthase,_mitochondrial\|G3DSA:3.40.50.720:FF:000072+517-652+Saccharopine_dehydrogenase_[NADP(+),_L-glutamate-forming]\|G3DSA:3.40.50.720:FF:000087+49-193+alpha-aminoadipic_semialdehyde_synthase,_mitochondrial	PTHR11133+51-964+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-968	8dda_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.718	106841.710	6.732	3.500	23.554	10.227	43.698	56.302	12.603	10.950	51.653

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	purple	3102.713	3083.083	1477.830	2008.657	3319.908	4937.664	1560.728	13544.923	375.012	2068.311	1342.612

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.288	-0.755	0.550	0.693	0.589	-1.653	1.342	-2.972	—	—	—	—	—

No JSON data available for plots.

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