Hg_chrom4_TN10mRNA_7793
Organism: Heterodera glycines Gene Locus: chr4:5179589-5180992 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.795 | 1.01 | 0.295 | 1.14 | 0.657 | 0.916 | 0.427 | 1.14 | 1.502 | 0.777 | 1.006 | 1.187 | 1.151 | 1.134 | 1.404 | 0.841 | 1.166 | 1.315 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7344
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.749
|
0.493
|
0.021
|
0.428
|
0.176
|
0.077
|
0.113
|
0.205
|
0.040
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008555
|
1.000
|
1.000
|
Hsc_gene_10251.t1
|
Hsc_gene_10251.t1
|
— |
Q9SA98.2 Alpha-ketoglutarate-dependent dioxygenase alkB [Arabidopsis thaliana]
|
KAI6173125.1 Fe2OG dioxygenase domain-containing protein [Aphelenchoides besseyi];KAI6209816.1 Fe2OG dioxygenase domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.851|GO:0110165_0.834|GO:0005622_0.771|GO:0008150_0.753|GO:0003674_0.738|GO:0005737_0.661|GO:0003824_0.644|GO:0043226_0.644|GO:0043229_0.629|GO:0016020_0.593|GO:0140640_0.549|GO:0032451_0.540|GO:0035514_0.540|GO:0140097_0.540|GO:0065007_0.528|GO:0043227_0.517|GO:0050789_0.510|GO:0043231_0.505
|
IPR004574+3-221+|IPR005123+107-222+|IPR027450+10-219+|IPR037151+6-223+
|
— |
PF13532+10-219+2OG-Fe(II)_oxygenase_superfamily
|
— |
PTHR16557+3-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
224-234
|
1.000
|
1-223
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
25968.610
|
5.136
|
-3.000
|
23.932
|
10.256
|
44.872
|
55.128
|
11.538
|
12.393
|
51.709
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
716.863
|
378.067
|
464.720
|
487.398
|
603.839
|
754.737
|
786.351
|
660.085
|
493.658
|
1215.335
|
906.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.229
|
0.178
|
0.277
|
0.337
|
— | — |
0.396
|
— | — | — | — | — |
No JSON data available for plots.