Hg_chrom4_TN10mRNA_7796
Organism: Heterodera glycines Gene Locus: chr4:5185885-5186583 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.696 | 1.393 | 1.089 | 0.413 | 1.297 | 0.461 | 0.855 | 0.0 | 0.798 | 0.89 | 2.359 | 2.466 | 1.164 | 0.921 | 0.978 | 1.198 | 0.785 | 0.635 | 0.921 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7347
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,KKKKE,RKISIFLSNPPTKRMKKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.921
|
0.040
|
0.020
|
0.182
|
0.028
|
0.009
|
0.022
|
0.007
|
0.013
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003836
|
2.000
|
1.000
|
Hsc_gene_10254.t1
|
Hsc_gene_10254.t1
|
— |
Q5REG1.1 Squamous cell carcinoma antigen recognized by T-cells 3 [Pongo abelii]
|
KAF7635572.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.861|GO:0110165_0.859|GO:0005622_0.837|GO:0043226_0.781|GO:0008150_0.770|GO:0043229_0.768|GO:0016020_0.730|GO:0043227_0.692|GO:0043231_0.690|GO:0003674_0.667|GO:0005488_0.653|GO:0009987_0.563|GO:0097159_0.556|GO:0003676_0.549|GO:0003723_0.537|GO:0008152_0.522|GO:0005634_0.520|GO:0043170_0.517|GO:0044238_0.514|GO:0006139_0.512
|
IPR000504+69-146_70-142_71-139+|IPR012677+16-159+|IPR035979+59-154+|IPR050502+24-150+
|
SM00360+70-142+
|
PF00076+71-139+RNA_recognition_motif
|
— |
PTHR48025+24-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-62
|
1.000
|
63-167
|
2do4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
18789.590
|
10.292
|
11.000
|
34.132
|
7.186
|
55.090
|
44.910
|
20.359
|
13.772
|
48.503
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
598.841
|
1252.449
|
768.860
|
510.075
|
377.943
|
344.154
|
383.570
|
706.217
|
340.426
|
735.883
|
566.401
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.935
|
-1.433
|
-0.482
|
-0.465
|
— | — |
0.933
|
-0.738
|
— | — | — | — | — |
No JSON data available for plots.