Hg_chrom4_TN10mRNA_7797
Organism: Heterodera glycines Gene Locus: chr4:5186747-5187535 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 0.957 | 0.973 | 0.426 | 1.235 | 0.739 | 0.931 | 0.206 | 0.732 | 0.89 | 2.058 | 2.663 | 0.8 | 0.95 | 1.008 | 1.176 | 1.282 | 0.748 | 0.633 | 0.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7348
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,RKISVYLSNPPPTKRMKM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.912
|
0.064
|
0.036
|
0.193
|
0.049
|
0.013
|
0.034
|
0.010
|
0.018
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003836
|
2.000
|
1.000
|
Hsc_gene_10254.t1
|
Hsc_gene_10254.t1
|
— |
Q5REG1.1 Squamous cell carcinoma antigen recognized by T-cells 3 [Pongo abelii]
|
KAF7635572.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.877|GO:0110165_0.874|GO:0005622_0.811|GO:0008150_0.765|GO:0043226_0.760|GO:0016020_0.758|GO:0043229_0.742|GO:0003674_0.700|GO:0005488_0.688|GO:0043227_0.675|GO:0043231_0.652|GO:0097159_0.606|GO:0003676_0.594|GO:0003723_0.568|GO:0009987_0.539
|
IPR000504+60-137_61-133_62-130+|IPR012677+9-149+|IPR035979+50-143+|IPR050374+15-186+
|
SM00360+61-133+
|
PF00076+62-130+RNA_recognition_motif
|
— |
PTHR23003+15-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53;122-243
|
1.000
|
54-121
|
2do4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
26787.760
|
10.313
|
14.500
|
31.687
|
5.350
|
54.733
|
45.267
|
18.930
|
12.757
|
51.440
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
790.784
|
838.956
|
748.904
|
653.435
|
724.918
|
596.045
|
633.350
|
763.439
|
1544.431
|
441.716
|
914.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.394
|
-0.498
|
— | — |
-0.267
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.