Hg_chrom4_TN10mRNA_7801
Organism: Heterodera glycines Gene Locus: chr4:5194036-5195095 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 1.257 | 1.193 | 0.799 | 1.48 | 1.188 | 0.689 | 1.158 | 0.858 | 0.887 | 1.053 | 1.59 | 1.18 | 0.817 | 1.891 | 0.772 | 0.949 | 0.819 | 0.891 | 0.568 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7352
|
— | — |
1.222
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRQKRKI,RKQIEQQHRRKTPKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.839
|
0.095
|
0.038
|
0.289
|
0.053
|
0.019
|
0.018
|
0.003
|
0.159
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002079
|
2.000
|
2.000
|
Hsc_gene_16964.t1;Hsc_gene_8573.t1
|
Hsc_gene_22402.t1;Hsc_gene_5177.t1;Hsc_gene_7462.t1;Hsc_gene_8659.t1;Hsc_gene_8741.t1;Hsc_gene_8741.t2
|
— | — |
KAI1723579.1 serine carboxypeptidase s28 domain-containing protein [Ditylenchus destructor]
|
PIN97450
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-181
|
1.000
|
182-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
29799.560
|
7.977
|
5.000
|
33.977
|
9.653
|
55.212
|
44.788
|
18.533
|
15.444
|
47.490
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
68.609
|
1.605
|
0.936
|
3.968
|
3.016
|
2.531
|
3.448
|
4.790
|
0.000
|
292.554
|
167.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
2.193
|
— | — | — | — | — |
-6.624
|
— |
-4.068
|
— | — |
No JSON data available for plots.