Hg_chrom4_TN10mRNA_7802
Organism: Heterodera glycines Gene Locus: chr4:5197204-5199647 Feature type: polypeptideProtein Sequence
Length: 636
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.152 | 1.097 | 1.001 | 0.38 | 1.074 | 1.169 | 0.636 | 1.494 | 1.048 | 1.062 | 0.739 | 1.202 | 1.267 | 0.937 | 1.765 | 0.943 | 0.825 | 1.024 | 0.726 | 0.74 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7353
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.583
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAR,RRQKRKI,RKQIEQQHRRKTPKR,RRLALCVHALLPGKQRKY,RRFVNPAKIFSKSMKSIRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.829
|
0.098
|
0.040
|
0.316
|
0.087
|
0.051
|
0.042
|
0.005
|
0.135
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000122
|
1.000
|
13.000
|
Hsc_gene_13263.t1;Hsc_gene_13263.t2;Hsc_gene_13263.t3;Hsc_gene_16300.t2;Hsc_gene_16300.t3;Hsc_gene_17423.t1;Hsc_gene_17423.t2;Hsc_gene_17423.t3;Hsc_gene_24929.t1;Hsc_gene_24929.t2;Hsc_gene_7462.t1;Hsc_gene_8741.t1;Hsc_gene_8741.t2
|
Hsc_gene_17234.t1;Hsc_gene_18050.t1;Hsc_gene_18051.t1;Hsc_gene_19039.t1;Hsc_gene_22402.t1;Hsc_gene_26262.t1;Hsc_gene_2997.t1;Hsc_gene_3087.t1;Hsc_gene_8659.t1;Hsc_gene_8741.t2
|
— | — |
KAF7635703.1 hypothetical protein Mgra_00004797 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+270-362+
|
— |
PF10551+270-362+MULE_transposase_domain
|
— |
PTHR47160+244-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-95;131-183;625-636
|
2.000
|
96-130;184-624
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
71708.290
|
9.280
|
19.500
|
28.459
|
11.006
|
49.371
|
50.629
|
16.509
|
11.950
|
49.843
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
115.675
|
32.686
|
19.950
|
22.022
|
46.530
|
43.088
|
13.962
|
16.635
|
33.192
|
408.106
|
247.429
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.943
|
-0.707
|
— |
1.049
|
— |
-1.619
|
-1.478
|
— | — | — | — | — | — |
No JSON data available for plots.