SCN Proteipedia

Hg_chrom4_TN10mRNA_7803

Organism: Heterodera glycines Gene Locus: chr4:5199934-5205065 Feature type: polypeptide

Protein Sequence

Length: 1,006

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.717	1.11	1.066	0.308	1.673	1.351	0.604	1.143	1.237	1.357	1.401	1.462	1.077	0.631	1.461	0.667	0.782	0.633	1.071	0.877	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7354	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRLKSDVEKSLLPKKELK,KRRAAVGDYWIEPPKRERK,RRAAVGDYWIEPPKRERKA,KKQSTQEKAEASTGATKRK,KRKEPSGATAQSKAKRAK.,TGATKRKEPSGATAQSKAKRAK	—	—	—	—	—	—	0.000	—	—	0.894	0.078	0.016	0.209	0.027	0.026	0.035	0.002	0.075	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008558	1.000	1.000	Hsc_gene_10256.t1	Hsc_gene_10256.t1	—	P41877.2 Chromatin-remodeling complex ATPase chain isw-1 [Caenorhabditis elegans]	KAI1707070.1 SLIDE domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0005524\|GO:0005634\|GO:0006338\|GO:0031491\|GO:0140658	GO:0008150_0.897\|GO:0009987_0.831\|GO:0005575_0.824\|GO:0110165_0.818\|GO:0005622_0.764\|GO:0043226_0.704\|GO:0043229_0.693\|GO:0003674_0.681\|GO:0065007_0.680\|GO:0050789_0.673\|GO:0016020_0.669\|GO:0050794_0.609\|GO:0005488_0.606\|GO:0043227_0.582\|GO:0071840_0.561\|GO:0043231_0.554\|GO:0016043_0.548\|GO:0008152_0.521\|GO:0043228_0.510\|GO:0043232_0.510\|GO:0044237_0.509\|GO:0009058_0.505\|GO:0043170_0.502	IPR000330+113-394+\|IPR001005+784-833_788-831_886-950+\|IPR001650+416-529_419-570_445-529+\|IPR009057+787-836_839-959+\|IPR014001+106-295_122-287+\|IPR015194+682-781+\|IPR015195+841-955+\|IPR017884+783-835+\|IPR027417+94-327_329-613_333-628+\|IPR036306+671-782_682-781+\|IPR038718+111-328+\|IPR044754+107-329+\|IPR049730+414-540+	SM00487+106-295+\|SM00490+445-529+\|SM00717+784-833_886-950+	PF00176+113-394+SNF2-related_domain\|PF00271+416-529+Helicase_conserved_C-terminal_domain\|PF09110+682-781+HAND\|PF09111+841-955+SLIDE	G3DSA:1.10.10.60:FF:000049+872-983+SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A_member\|G3DSA:3.40.50.10810:FF:000005+78-350+Photoperiod-independent_early_flowering_1\|G3DSA:3.40.50.300:FF:000082+333-628+ISWI_chromatin_remodeling_complex_ATPase_ISW1	PTHR45623+62-984+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-97;732-781;960-1006	2.000	98-731;782-959	5jxr_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.572	117283.670	8.333	16.500	34.592	10.537	54.076	45.924	18.688	15.905	39.662

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2796.544	4891.155	3639.647	3329.244	3213.657	2952.922	2654.905	2918.717	3032.014	1110.778	1934.165

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.657	-0.692	—	-0.083	—	-0.143	—	—	—	—	—	—	—

No JSON data available for plots.

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