Hg_chrom4_TN10mRNA_7804
Organism: Heterodera glycines Gene Locus: chr4:5205062-5211376 Feature type: polypeptideProtein Sequence
Length: 1,107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 0.966 | 0.821 | 0.748 | 1.189 | 1.343 | 0.355 | 0.903 | 1.506 | 1.502 | 0.684 | 1.754 | 1.154 | 0.782 | 1.106 | 1.265 | 0.785 | 1.013 | 0.764 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7355
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRDLMRKVLISRKVKI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.661
|
0.063
|
0.011
|
0.573
|
0.091
|
0.146
|
0.178
|
0.081
|
0.120
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008559
|
1.000
|
1.000
|
Hsc_gene_10258.t1
|
Hsc_gene_10257.t1;Hsc_gene_10258.t1
|
— |
Q14974.2 Importin subunit beta-1 [Homo sapiens]
|
KAI3418939.1 Exportin-5 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005049|GO:0006611|GO:0006886|GO:0031267
|
GO:0005575_0.912|GO:0110165_0.905|GO:0005622_0.836|GO:0008150_0.731|GO:0005737_0.713|GO:0009987_0.682|GO:0043226_0.661|GO:0016020_0.652|GO:0043229_0.631|GO:0003674_0.589|GO:0051179_0.544|GO:0051234_0.539|GO:0043227_0.537|GO:0006810_0.534|GO:0043231_0.507
|
IPR001494+22-102_24-102+|IPR011989+1-1061+|IPR016024+2-1054+|IPR021133+171-211+|IPR045065+78-1083+|IPR045478+283-1085+
|
SM00913+22-102+
|
PF03810+24-102+Importin-beta_N-terminal_domain|PF19273+283-1085+Exportin-5_family
|
— |
PTHR11223+78-1083+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1086-1107
|
1.000
|
1-1085
|
1ibr_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
124249.120
|
5.781
|
-9.000
|
23.397
|
9.304
|
46.432
|
53.568
|
11.743
|
11.653
|
47.516
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
salmon
|
1833.605
|
3236.834
|
1423.205
|
1593.371
|
1699.507
|
1262.230
|
2156.894
|
1203.583
|
1418.577
|
2242.233
|
1889.237
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.416
|
-1.160
|
0.272
|
— |
-0.414
|
0.784
|
— |
0.985
|
— | — | — | — | — |
No JSON data available for plots.