Hg_chrom4_TN10mRNA_7815
Organism: Heterodera glycines Gene Locus: chr4:5235996-5239789 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.679 | 0.354 | 0.587 | 0.852 | 0.437 | 0.84 | 0.73 | 1.676 | 1.677 | 0.737 | 1.717 | 1.554 | 0.561 | 0.546 | 1.842 | 0.838 | 1.217 | 1.31 | 1.073 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
6-26
|
0.998
|
8-28
|
0.997
|
— | — |
0.000
|
— | — |
0.043
|
0.045
|
0.098
|
0.088
|
0.202
|
0.553
|
0.729
|
0.086
|
0.419
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008568
|
1.000
|
1.000
|
Hsc_gene_10269.t1
|
Hsc_gene_10269.t1
|
— |
Q3SWX0.1 Magnesium transporter NIPA2 [Bos taurus]
|
KAI1721537.1 magnesium transporter NIPA domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015095|GO:0015693|GO:0016020
|
GO:0008150_0.879|GO:0005575_0.872|GO:0110165_0.869|GO:0005886_0.855|GO:0016020_0.855|GO:0071944_0.855|GO:0006810_0.746|GO:0051179_0.746|GO:0051234_0.746|GO:0006811_0.633|GO:0006812_0.595|GO:0030001_0.587|GO:0005622_0.519|GO:0005737_0.519|GO:0005773_0.516|GO:0043226_0.516|GO:0043227_0.516|GO:0043229_0.516|GO:0043231_0.516|GO:0015693_0.515
|
IPR008521+86-381_86-393+
|
— |
PF05653+86-381+Magnesium_transporter_NIPA
|
G3DSA:1.10.3730.20:FF:000016+89-211+NIPA1_(NonImprinted_gene_in_Prader-Willi/Angelman_syndrome_region_1)_homolog
|
PTHR12570+86-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-411
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
44836.400
|
7.898
|
5.000
|
16.058
|
12.409
|
38.686
|
61.314
|
9.002
|
7.056
|
50.365
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
blue
|
3890.125
|
1798.820
|
2327.090
|
1830.356
|
2367.342
|
2907.426
|
3579.766
|
3489.613
|
1622.772
|
8939.561
|
5803.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.142
|
-0.112
|
-0.237
|
0.339
|
0.311
|
0.310
|
— | — |
-2.570
|
— |
-1.582
|
— | — |
No JSON data available for plots.