Hg_chrom4_TN10mRNA_7816
Organism: Heterodera glycines Gene Locus: chr4:5242777-5246307 Feature type: polypeptideProtein Sequence
Length: 653
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 0.499 | 0.557 | 1.056 | 0.613 | 2.199 | 0.802 | 1.685 | 0.885 | 1.097 | 0.464 | 0.991 | 1.659 | 1.443 | 0.906 | 2.231 | 0.552 | 0.859 | 0.471 | 0.495 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7366
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.449
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
51-87
|
0.981
|
— | — |
0.000
|
— | — |
0.870
|
0.183
|
0.012
|
0.405
|
0.046
|
0.033
|
0.030
|
0.005
|
0.052
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008569
|
1.000
|
1.000
|
Hsc_gene_10270.t1
|
Hsc_gene_10270.t1
|
— |
P41829.3 Nuclear hormone receptor family member nhr-6 [Caenorhabditis elegans]
|
KAI1721543.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.933|GO:0065007_0.933|GO:0050789_0.927|GO:0009987_0.896|GO:0050794_0.896|GO:0003674_0.877|GO:0005488_0.873|GO:0005575_0.860|GO:0110165_0.846|GO:0008152_0.822|GO:0019222_0.822|GO:0031323_0.820|GO:0044237_0.820|GO:0043170_0.813|GO:0060255_0.813|GO:0044238_0.809|GO:0080090_0.809|GO:0097159_0.806|GO:0009058_0.801|GO:0009059_0.801|GO:0009889_0.801|GO:0010556_0.801|GO:0031326_0.801|GO:0044249_0.801|GO:0003676_0.798|GO:0003677_0.798|GO:0043565_0.798|GO:0010467_0.796|GO:0010468_0.782|GO:0006139_0.781|GO:0016070_0.781|GO:0032774_0.781|GO:0034654_0.781|GO:0090304_0.781|GO:0141187_0.781|GO:0043226_0.780|GO:0019219_0.779|GO:0003690_0.775|GO:0006351_0.775|GO:1990837_0.775|GO:0051252_0.770|GO:2001141_0.768|GO:0005622_0.765|GO:0043229_0.765|GO:0000976_0.762|GO:0001067_0.762|GO:0006355_0.762|GO:0006357_0.724|GO:0006366_0.724|GO:0050896_0.706|GO:0032502_0.692|GO:0048856_0.689|GO:0032501_0.687|GO:0048518_0.684|GO:0140110_0.678|GO:0048522_0.673|GO:0003700_0.668|GO:0000977_0.664|GO:0016020_0.637|GO:0009893_0.618|GO:0031325_0.606|GO:0009891_0.598|GO:0031328_0.598|GO:0010604_0.594|GO:0000785_0.593|GO:0000981_0.593|GO:0005694_0.593|GO:0043228_0.593|GO:0043232_0.593|GO:0010557_0.590|GO:0007154_0.570|GO:0023052_0.569|GO:0048513_0.560|GO:0051716_0.560|GO:0045935_0.558|GO:0051254_0.558|GO:0007275_0.553|GO:0045893_0.553|GO:1902680_0.553|GO:0043227_0.531|GO:0043231_0.523|GO:0007165_0.520|GO:0045944_0.502
|
IPR001628+255-326_255-330_257-324_258-274_258-284_274-289_307-315_315-323+|IPR013088+248-349+|IPR035500+333-582_371-603+
|
SM00399+255-326+
|
PF00105+257-324+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000116+254-350+Nuclear_receptor_subfamily_4,_group_A,_member_1
|
PTHR24085+36-582+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;616-653
|
1.000
|
5-615
|
6l6q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
70623.660
|
8.000
|
16.000
|
17.611
|
11.639
|
47.320
|
52.680
|
10.873
|
6.738
|
54.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
197.367
|
230.371
|
565.346
|
128.793
|
144.286
|
428.015
|
556.620
|
197.728
|
6.025
|
14.777
|
11.026
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.065
|
-0.976
|
-2.025
|
— |
1.583
|
0.390
|
-1.225
|
1.639
|
— |
4.635
|
4.470
|
— | — |
No JSON data available for plots.