SCN Proteipedia

Hg_chrom4_TN10mRNA_7820

Organism: Heterodera glycines Gene Locus: chr4:5260118-5263690 Feature type: polypeptide

Protein Sequence

Length: 587

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.713	0.99	1.239	0.411	1.221	1.267	0.548	1.278	1.476	1.519	1.032	1.403	0.899	0.819	1.391	0.852	0.754	0.903	0.786	0.952	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7370	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.337	0.093	0.018	0.580	0.240	0.515	0.282	0.013	0.280	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008571	1.000	1.000	Hsc_gene_10272.t1	Hsc_gene_10272.t1	—	P34815.4 Acetylcholine regulator unc-18 [Caenorhabditis elegans]	KAI3418953.1 putative acetylcholine regulator unc-18 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016192	GO:0005575_0.907\|GO:0110165_0.906\|GO:0008150_0.870\|GO:0016020_0.826\|GO:0009987_0.813\|GO:0005622_0.769\|GO:0005737_0.702\|GO:0071840_0.675\|GO:0071944_0.669\|GO:0016043_0.668\|GO:0003674_0.664\|GO:0005886_0.663\|GO:0051179_0.644\|GO:0006810_0.628\|GO:0051234_0.628\|GO:0043226_0.620\|GO:0043229_0.604\|GO:0006996_0.603\|GO:0065007_0.599\|GO:0061024_0.592\|GO:0050789_0.586\|GO:0016192_0.580\|GO:0005488_0.579\|GO:0050896_0.573\|GO:0043227_0.571\|GO:0016050_0.563\|GO:0050794_0.562\|GO:0061025_0.561\|GO:0048284_0.559\|GO:0090174_0.558\|GO:0006906_0.557\|GO:0043231_0.553\|GO:0005515_0.550\|GO:0046903_0.537\|GO:0032940_0.535\|GO:0140352_0.535\|GO:0006887_0.531\|GO:0099500_0.531\|GO:0140029_0.531\|GO:0051641_0.526	IPR001619+1-587_9-575_30-575+\|IPR027482+137-575+\|IPR036045+1-584+\|IPR043127+244-355+\|IPR043154+1-130+	—	PF00995+30-575+Sec1_family	G3DSA:3.40.50.2060:FF:000001+1-130+syntaxin-binding_protein_1_isoform_X2\|G3DSA:3.90.830.10:FF:000001+244-355+syntaxin-binding_protein_1_isoform_X2	PTHR11679+9-575+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-587	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.546	67402.250	7.029	4.500	30.324	10.051	50.085	49.915	16.184	14.140	43.782

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1677.904	2483.729	1944.482	1489.647	1447.915	2026.581	2028.371	2255.026	1599.715	1012.637	1264.242

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.581	-0.875	-0.277	—	0.499	—	—	—	—	—	—	—	—

No JSON data available for plots.

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