SCN Proteipedia

Hg_chrom4_TN10mRNA_7821

Organism: Heterodera glycines Gene Locus: chr4:5263903-5267828 Feature type: polypeptide

Protein Sequence

Length: 982

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.22	0.876	1.037	0.386	1.494	1.332	0.691	0.866	0.928	1.28	1.126	1.438	0.849	0.783	1.517	0.815	0.751	0.679	1.958	0.539	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7371	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.958

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKYKEAVESYRKERPK	—	—	—	—	—	—	0.000	—	—	0.747	0.109	0.010	0.274	0.069	0.038	0.066	0.005	0.150	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008572	1.000	1.000	Hsc_gene_10273.t1	Hsc_gene_10273.t1	—	Q91YR7.1 Pre-mRNA-processing factor 6 [Mus musculus]	KAI1705808.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0005515\|GO:0006396	GO:0008150_0.955\|GO:0005575_0.922\|GO:0110165_0.919\|GO:0009987_0.904\|GO:0005622_0.871\|GO:0016020_0.837\|GO:0043226_0.817\|GO:0008152_0.805\|GO:0043229_0.794\|GO:0044238_0.790\|GO:0009058_0.780\|GO:0044237_0.780\|GO:0043170_0.767\|GO:0044249_0.759\|GO:0043227_0.754\|GO:0006139_0.745\|GO:0009059_0.741\|GO:0010467_0.731\|GO:0043231_0.731\|GO:0034654_0.721\|GO:0090304_0.719\|GO:0141187_0.715\|GO:0016070_0.711\|GO:0032774_0.707\|GO:0006396_0.680\|GO:0032991_0.662\|GO:0005634_0.638\|GO:0065007_0.615\|GO:0050789_0.594\|GO:0050794_0.576\|GO:0140513_0.561\|GO:1990904_0.547\|GO:0071840_0.539\|GO:0016043_0.538\|GO:0016071_0.519\|GO:0006397_0.516\|GO:0048518_0.516\|GO:0003674_0.515\|GO:0000375_0.514\|GO:0000377_0.514\|GO:0000398_0.514\|GO:0008380_0.514\|GO:0048522_0.511\|GO:0019222_0.507\|GO:0031323_0.505\|GO:0060255_0.501\|GO:0080090_0.501	IPR003107+331-363_395-427_456-488_489-518_596-628_630-662_664-696_698-729_731-763_765-797_799-831_833-865_897-929_931-963+\|IPR010491+22-185+\|IPR011990+319-395_400-649_456-538_547-752_650-727_750-977_751-957+\|IPR019734+751-784_752-782+\|IPR045075+66-977+	SM00386+331-363_395-427_456-488_489-518_596-628_630-662_664-696_698-729_731-763_765-797_799-831_833-865_897-929_931-963+	PF06424+22-185+PRP1_splicing_factor,_N-terminal\|PF13181+752-782+Tetratricopeptide_repeat\|PF14559+663-726+Tetratricopeptide_repeat	G3DSA:1.25.40.10:FF:000058+749-963+Pre-mRNA_processing_factor_6	PTHR11246+66-977+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-228	1.000	229-982	6qx9_5J	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.609	111371.430	7.828	10.500	31.263	9.165	50.509	49.491	16.599	14.664	45.723

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5048.690	4420.384	2930.753	3188.516	3188.650	3265.684	2955.141	2893.634	11696.408	4749.675	7726.847

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.822	-0.608	0.230	—	—	—	-0.279	—	—	—	—	—	—

No JSON data available for plots.

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