SCN Proteipedia

Hg_chrom4_TN10mRNA_7822

Organism: Heterodera glycines Gene Locus: chr4:5268825-5273485 Feature type: polypeptide

Protein Sequence

Length: 811

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.147	1.376	0.807	0.723	0.863	1.739	0.572	1.726	0.932	1.333	0.691	1.233	0.856	1.091	1.208	1.497	0.788	0.654	0.759	0.435	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7372	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.718

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RRRR	33-53	0.970	14-51	0.997	—	—	0.000	—	—	0.312	0.182	0.008	0.558	0.106	0.294	0.309	0.059	0.397	0.065

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008573	1.000	1.000	Hsc_gene_10274.t1	Hsc_gene_10274.t1	—	Q66H91.1 ARF GTPase-activating protein GIT2 [Rattus norvegicus]	KAI1716934.1 putative GTPase activating protein for arf domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005096\|GO:0005515\|GO:0007420\|GO:0032012	GO:0005575_0.849\|GO:0110165_0.843\|GO:0008150_0.813\|GO:0009987_0.743\|GO:0016020_0.696\|GO:0003674_0.694\|GO:0005488_0.677\|GO:0005622_0.647\|GO:0065007_0.640\|GO:0050789_0.626\|GO:0050794_0.616\|GO:0043226_0.507\|GO:0032501_0.505	IPR001164+1-122_4-123_5-24_6-115_24-41_45-66+\|IPR002110+161-193_162-192+\|IPR013724+325-355_326-352+\|IPR022018+689-804+\|IPR032352+415-472+\|IPR036770+120-226_132-218+\|IPR037278+6-116+\|IPR038508+4-119+\|IPR047161+6-804+	SM00105+4-123+\|SM00555+325-355+	PF00023+162-192+Ankyrin_repeat\|PF01412+6-115+Putative_GTPase_activating_protein_for_Arf\|PF08518+326-352+Spa2_homology_domain_(SHD)_of_GIT\|PF12205+689-804+G_protein-coupled_receptor_kinase-interacting_protein_1_C_term\|PF16559+415-472+GIT_coiled-coil_Rho_guanine_nucleotide_exchange_factor	—	PTHR46097+6-804+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	356-413;465-677;808-811	3.000	1-355;414-464;678-807	6jmt_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.864	89391.740	8.273	21.000	23.551	9.001	51.541	48.459	13.933	9.618	52.404

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	yellow	2216.288	2825.379	2069.426	1971.673	2125.853	1803.986	2874.994	1842.223	2310.318	2145.945	2216.391

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.679	-0.656	—	—	-0.222	0.683	—	0.786	—	—	—	—	—

No JSON data available for plots.

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