Hg_chrom4_TN10mRNA_7823
Organism: Heterodera glycines Gene Locus: chr4:5274059-5276699 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 1.055 | 0.627 | 0.25 | 1.18 | 0.977 | 0.821 | 1.089 | 1.089 | 1.668 | 0.797 | 1.388 | 2.017 | 0.873 | 1.148 | 0.804 | 0.744 | 1.127 | 1.256 | 0.641 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7373
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KKRK,RAAKRVK
|
— | — | — | — | — |
0.514
|
0.074
|
1.000
|
— |
0.072
|
0.094
|
0.024
|
0.214
|
0.910
|
0.275
|
0.410
|
0.054
|
0.326
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008574
|
1.000
|
1.000
|
Hsc_gene_10275.t1
|
Hsc_gene_10275.t1
|
— |
Q21706.2 Putative UDP-glucuronosyltransferase ugt-47 [Caenorhabditis elegans]
|
KAI1715117.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.810|GO:0003674_0.667|GO:0009987_0.635|GO:0005575_0.591|GO:0110165_0.575|GO:0016020_0.546|GO:0003824_0.539|GO:0016740_0.504
|
IPR002213+28-473_29-543+|IPR050271+15-533+
|
— |
PF00201+29-543+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+295-474+UDP-glucuronosyltransferase
|
PTHR48043+15-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-551
|
6lf6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
62250.080
|
8.155
|
8.000
|
23.593
|
13.249
|
42.105
|
57.895
|
13.067
|
10.526
|
45.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
565.332
|
558.593
|
1180.227
|
579.747
|
552.939
|
421.392
|
485.073
|
748.494
|
740.904
|
220.223
|
443.372
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
— |
-0.917
|
— |
-0.378
|
0.213
|
0.722
|
-0.482
|
— | — | — | — | — |