Hg_chrom4_TN10mRNA_7828
Organism: Heterodera glycines Gene Locus: chr4:5287637-5291234 Feature type: polypeptideProtein Sequence
Length: 652
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.927 | 0.53 | 0.793 | 1.278 | 0.787 | 0.785 | 0.767 | 1.159 | 1.368 | 0.837 | 1.804 | 1.193 | 0.708 | 1.753 | 1.074 | 1.157 | 0.976 | 0.944 | 0.586 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7376
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRGREKVFYFFSVRKK.,KKKLSKKGVKCQREGEREGSERERKRGGERERGEREREWMRGREKKKEREIKGGGERERGERDREREWRRGREK
|
34-54
|
0.834
|
— | — | — | — |
0.000
|
— | — |
0.101
|
0.087
|
0.005
|
0.151
|
0.230
|
0.145
|
0.111
|
0.004
|
0.869
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001886
|
3.000
|
1.000
|
Hsc_gene_10279.t3
|
Hsc_gene_10279.t1;Hsc_gene_10279.t2;Hsc_gene_10279.t3
|
— |
Q59E83.1 Neuropeptide receptor 22 [Caenorhabditis elegans]
|
KAI1705942.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.858|GO:0005575_0.857|GO:0110165_0.857|GO:0009987_0.840|GO:0065007_0.794|GO:0016020_0.793|GO:0050789_0.769|GO:0005886_0.761|GO:0071944_0.761|GO:0003674_0.750|GO:0050794_0.739|GO:0050896_0.725|GO:0051716_0.709|GO:0007154_0.695|GO:0023052_0.692|GO:0007165_0.668|GO:0005488_0.634|GO:0007186_0.572|GO:0060089_0.559|GO:0038023_0.555|GO:0004888_0.529|GO:0043226_0.519|GO:0004930_0.507
|
IPR000276+21-45_30-473_36-458_54-75_102-124_138-159_196-219_398-422_440-466+|IPR017452+36-458+
|
SM01381+30-473+
|
PF00001+36-458+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+13-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
238-372;489-652
|
2.000
|
1-237;373-488
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
73346.750
|
9.800
|
28.000
|
26.227
|
9.049
|
47.853
|
52.147
|
15.644
|
10.583
|
47.699
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
689.720
|
241.115
|
945.016
|
927.563
|
654.264
|
545.930
|
685.517
|
1645.423
|
299.461
|
676.120
|
514.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.741
|
1.807
|
— |
-0.536
|
-0.246
|
0.339
|
1.493
|
-1.123
|
— | — | — | — | — |
No JSON data available for plots.