Hg_chrom4_TN10mRNA_7829
Organism: Heterodera glycines Gene Locus: chr4:5300614-5302092 Feature type: polypeptideProtein Sequence
Length: 265
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 0.965 | 0.823 | 0.651 | 1.447 | 0.774 | 0.584 | 1.509 | 0.503 | 1.071 | 0.972 | 0.666 | 1.363 | 1.306 | 1.925 | 1.617 | 0.866 | 0.915 | 0.871 | 0.333 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7377
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,KKRTEKGGAVLRK,RKLQQKSIQTPKRRRSE
|
— | — |
5-46
|
0.966
|
— | — |
0.000
|
— | — |
0.977
|
0.069
|
0.038
|
0.355
|
0.010
|
0.009
|
0.006
|
0.025
|
0.025
|
0.004
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008576
|
1.000
|
1.000
|
Hsc_gene_10280.t1
|
Hsc_gene_10280.t1
|
— | — |
KAI1727399.1 cyclin-dependent kinase inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004861|GO:0005634|GO:0051726
|
GO:0005575_0.932|GO:0008150_0.929|GO:0110165_0.925|GO:0005622_0.886|GO:0009987_0.877|GO:0065007_0.875|GO:0050789_0.870|GO:0050794_0.854|GO:0043226_0.852|GO:0016020_0.850|GO:0043229_0.837|GO:0032501_0.795|GO:0043227_0.793|GO:0008152_0.782|GO:0032502_0.782|GO:0043170_0.782|GO:0048856_0.782|GO:0043231_0.780|GO:0048518_0.771|GO:0009058_0.768|GO:0009059_0.768|GO:0019222_0.768|GO:0044237_0.768|GO:0044249_0.768|GO:0044238_0.761|GO:0071840_0.760|GO:0048522_0.759|GO:0060255_0.759|GO:0007275_0.758|GO:0080090_0.756|GO:0006139_0.754|GO:0090304_0.751|GO:0048519_0.749|GO:0016043_0.748|GO:0034654_0.747|GO:0048731_0.741|GO:0141187_0.741|GO:0048523_0.738|GO:0030154_0.734|GO:0048869_0.734|GO:0019219_0.721|GO:0048513_0.709|GO:0006996_0.706|GO:0005634_0.705|GO:0050793_0.701|GO:0022414_0.699|GO:0003006_0.692|GO:0045595_0.691|GO:0007049_0.686|GO:0022402_0.686|GO:0048608_0.686|GO:0061458_0.686|GO:0048285_0.684|GO:0000280_0.683|GO:0051726_0.682|GO:0051301_0.681|GO:0000278_0.680|GO:0006259_0.680|GO:0140014_0.680|GO:1903047_0.680|GO:0010564_0.677|GO:0007548_0.676|GO:0007346_0.675|GO:0045137_0.675|GO:0006260_0.674|GO:0008406_0.674|GO:0044770_0.674|GO:0044772_0.674|GO:0045787_0.674|GO:0051052_0.674|GO:0071897_0.674|GO:0045786_0.673|GO:1901987_0.673|GO:0000082_0.670|GO:0006261_0.670|GO:0006270_0.670|GO:0006275_0.670|GO:0010948_0.670|GO:0032875_0.670|GO:0042023_0.670|GO:0044786_0.670|GO:0044843_0.670|GO:0045930_0.670|GO:0051302_0.670|GO:0070314_0.670|GO:0090068_0.670|GO:0090329_0.670|GO:1901988_0.670|GO:1901990_0.670|GO:1901991_0.670|GO:1902806_0.670|GO:1902807_0.670|GO:1903450_0.670|GO:1903452_0.670|GO:2000045_0.670|GO:2000134_0.670
|
IPR003175+52-98+|IPR044898+39-123+
|
— |
PF02234+52-98+Cyclin-dependent_kinase_inhibitor
|
— |
PTHR10265+38-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
109-218
|
2.000
|
1-108;219-265
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
29996.710
|
9.508
|
11.000
|
32.075
|
10.189
|
55.849
|
44.151
|
18.868
|
13.208
|
50.943
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
728.167
|
1274.016
|
756.718
|
834.323
|
995.457
|
1221.832
|
1199.198
|
936.934
|
290.178
|
261.166
|
273.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.982
|
-0.748
|
0.250
|
0.222
|
0.311
|
— |
-0.491
|
0.499
|
— | — | — | — | — |
No JSON data available for plots.