Hg_chrom4_TN10mRNA_7833
Organism: Heterodera glycines Gene Locus: chr4:5306915-5309033 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.496 | 0.675 | 0.754 | 0.286 | 0.83 | 0.851 | 1.235 | 1.452 | 0.553 | 1.402 | 0.943 | 1.709 | 0.922 | 0.798 | 0.593 | 1.126 | 1.02 | 1.132 | 2.234 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7380
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.818
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.204
|
0.676
|
0.031
|
0.599
|
0.076
|
0.144
|
0.050
|
0.155
|
0.133
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008578
|
1.000
|
1.000
|
Hsc_gene_10283.t1
|
Hsc_gene_10283.t1
|
— |
Q3T0Z7.1 Dihydropteridine reductase [Bos taurus]
|
KAI1713171.1 enoyl-(Acyl carrier protein) reductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.740|GO:0005575_0.730|GO:0110165_0.727|GO:0003674_0.697|GO:0016020_0.630|GO:0005622_0.623|GO:0005737_0.613|GO:0008152_0.605|GO:0003824_0.591|GO:0043226_0.565|GO:0043227_0.540|GO:0016491_0.510
|
IPR002347+8-188+|IPR020904+132-160+|IPR036291+7-211+
|
— |
PF00106+8-188+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000157+3-241+Quinoid_dihydropteridine_reductase
|
PTHR15104+1-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
220-241
|
1.000
|
1-219
|
1ooe_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
25514.150
|
7.479
|
3.500
|
21.162
|
9.959
|
41.494
|
58.506
|
12.033
|
9.129
|
56.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1485.916
|
4026.987
|
475.047
|
1498.050
|
2272.876
|
3959.731
|
1698.211
|
634.280
|
78.494
|
980.068
|
593.679
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.315
|
-1.564
|
1.767
|
0.570
|
0.816
|
-1.211
|
-2.753
|
1.566
|
-3.790
|
4.449
|
— | — | — |
No JSON data available for plots.