Hg_chrom4_TN10mRNA_7834
Organism: Heterodera glycines Gene Locus: chr4:5309488-5315525 Feature type: polypeptideProtein Sequence
Length: 839
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 1.414 | 1.04 | 0.699 | 0.993 | 1.07 | 0.61 | 1.669 | 1.404 | 0.934 | 0.885 | 0.982 | 1.887 | 0.871 | 1.386 | 0.988 | 0.528 | 1.228 | 1.192 | 1.227 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7381
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRTDNGYEFLAYVKRIKF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.513
|
0.176
|
0.013
|
0.559
|
0.144
|
0.182
|
0.103
|
0.026
|
0.120
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003840
|
1.000
|
2.000
|
Hsc_gene_10285.t1;Hsc_gene_10287.t1
|
Hsc_gene_10284.t1;Hsc_gene_10285.t1;Hsc_gene_10287.t1
|
— |
Q22888.1 Eukaryotic translation initiation factor 4E-4 [Caenorhabditis elegans]
|
KAF7635590.1 Pept_C1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0005737|GO:0006413
|
GO:0008150_0.875|GO:0005575_0.640|GO:0110165_0.620|GO:0003674_0.612|GO:0050896_0.559|GO:0005622_0.545|GO:0009987_0.527|GO:0005488_0.518
|
IPR001040+610-804_635-792+|IPR019770+690-713+|IPR023398+612-805_630-805+
|
— |
PF01652+635-792+Eukaryotic_initiation_factor_4E
|
G3DSA:3.30.760.10:FF:000014+602-803+Eukaryotic_translation_initiation_factor_4E-4
|
PTHR11960+610-804+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;806-839
|
1.000
|
13-805
|
5nvn_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
97505.040
|
8.324
|
22.000
|
27.652
|
15.852
|
48.033
|
51.967
|
15.971
|
11.681
|
46.484
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1746.822
|
1502.551
|
1312.243
|
1398.933
|
1732.422
|
1568.051
|
2568.736
|
1010.927
|
466.651
|
3132.158
|
1989.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.426
|
-0.240
|
0.202
|
0.277
|
— |
0.722
|
-0.739
|
1.488
|
-2.876
|
— | — | — | — |
No JSON data available for plots.