Hg_chrom4_TN10mRNA_7836
Organism: Heterodera glycines Gene Locus: chr4:5318977-5321575 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.624 | 0.907 | 1.204 | 0.831 | 0.895 | 1.039 | 0.998 | 1.275 | 0.876 | 0.378 | 1.467 | 1.385 | 1.343 | 1.527 | 0.891 | 0.899 | 0.756 | 2.494 | 0.88 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7383
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.054
|
0.053
|
0.009
|
0.219
|
0.304
|
0.460
|
0.305
|
0.007
|
0.215
|
0.682
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003841
|
2.000
|
1.000
|
Hsc_gene_10288.t1
|
Hsc_gene_10286.t1;Hsc_gene_10286.t2;Hsc_gene_10288.t1
|
— |
Q9WUU7.1 Cathepsin Z [Mus musculus]
|
KAF7635587.1 Pept_C1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0008150_0.754|GO:0005575_0.737|GO:0110165_0.734|GO:0003674_0.608|GO:0016020_0.544|GO:0005622_0.524|GO:0005737_0.513
|
IPR000668+156-373_156-394+|IPR013128+123-370+|IPR033157+156-396+|IPR038765+149-387+
|
SM00645+156-394+
|
PF00112+156-373+Papain_family_cysteine_protease
|
G3DSA:3.90.70.10:FF:000158+128-397+CathePsin_Z
|
PTHR12411+123-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
96-147
|
2.000
|
1-95;148-401
|
1deu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
45313.240
|
7.273
|
4.000
|
21.945
|
13.217
|
44.140
|
55.860
|
11.970
|
9.975
|
53.616
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1474.254
|
988.469
|
2180.544
|
2098.181
|
1633.926
|
1395.048
|
2504.945
|
1455.523
|
1244.573
|
920.191
|
1059.212
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
0.949
|
— |
-0.393
|
-0.213
|
0.855
|
— |
0.925
|
— | — | — | — | — |
No JSON data available for plots.